Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220411142916.16841-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-wppi): New variable.
---
gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
Toggle diff (52 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ce1e23f0bf..9d6c7cd5a3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9315,6 +9315,45 @@ (define-public r-xcms
data for high-throughput, untargeted analyte profiling.")
(license license:gpl2+)))
+(define-public r-wppi
+ (package
+ (name "r-wppi")
+ (version "1.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "wppi" version))
+ (sha256
+ (base32
+ "1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"))))
+ (properties `((upstream-name . "wppi")))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'set-HOME
+ (lambda _ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs (list r-dplyr
+ r-igraph
+ r-logger
+ r-magrittr
+ r-matrix
+ r-omnipathr
+ r-progress
+ r-purrr
+ r-rcurl
+ r-rlang
+ r-tibble
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/AnaGalhoz37/wppi")
+ (synopsis "Weighting protein-protein interactions")
+ (description
+ "This package predicts functional relevance of protein-protein
+interactions based on functional annotations such as Human Protein Ontology and
+Gene Ontology, and prioritizes genes based on network topology, functional
+scores and a path search algorithm.")
+ (license license:expat)))
+
(define-public r-wrench
(package
(name "r-wrench")
--
2.34.0