From debbugs-submit-bounces@debbugs.gnu.org Mon Apr 11 10:29:46 2022 Received: (at submit) by debbugs.gnu.org; 11 Apr 2022 14:29:46 +0000 Received: from localhost ([127.0.0.1]:44923 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ndv33-0000Q6-Pq for submit@debbugs.gnu.org; Mon, 11 Apr 2022 10:29:46 -0400 Received: from lists.gnu.org ([209.51.188.17]:45624) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ndv32-0000Py-49 for submit@debbugs.gnu.org; Mon, 11 Apr 2022 10:29:44 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:34014) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ndv31-00057S-Lr for guix-patches@gnu.org; Mon, 11 Apr 2022 10:29:43 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:34595) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ndv2y-0003eA-LQ for guix-patches@gnu.org; Mon, 11 Apr 2022 10:29:42 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 1F9163000F1 for ; Mon, 11 Apr 2022 16:29:37 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1649687376; x=1651501777; bh=1jJjrZBsFmKb0MgMx3tHT6zuNfCdkSbe/cvZbfQOL9M=; b=cJNoxJkZdt2N 0hYIWQOqBMKOOKQQeZHPkOq6+q8gD7zGOnIO+GZcuyWOZcHJ1TZtlwGVBe4Rj2a7 DWvpB+ZG/oN2fwFQrxrWmqgpFuTvnt5vFYnfu7hPxMGOEAbXdQoUdlBAF5AkMGR1 EKuZQw9T0oNEHr8A1rI+SgIaBMLBjsA= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id G1vNhxyi-7NC for ; Mon, 11 Apr 2022 16:29:36 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Mon, 11 Apr 2022 16:29:36 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Mon, 11 Apr 2022 16:29:35 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-wppi. Date: Mon, 11 Apr 2022 16:29:16 +0200 Message-ID: <20220411142916.16841-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26828.000 X-TM-AS-Result: No-10--0.323600-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkELxE VFTgBaMYRRa406V/YwyBUGewL2YXt7BgXed5LSW6qhcdnP91eXGFzNNPDc6umBHfiujuTbedfqz gwmbX+MXTyK4Ze4dWQCeKhfAy/6D2vs1Xg+eN+ZpjLoC0DLthl1jUGw4+3s0tU72YOAMDJjieAi CmPx4NwGmRqNBHmBve38LauI2fxt4qtq5d3cxkNRqXnrxrKCOXIsUwdH8RnzySXOgT4YLhLLHDp M9hvsSn1cBFkviVT560hpOZKzoL6lmviTPuktyxzI0qtlomsNunulm7UYpGn089Zny0d4SODUEk BTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.323600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26828.000 X-TM-SNTS-SMTP: DFF8344FE4DC356F48EFC478D27A91E1CB1792C6757FC174A51DDC251EA1C0362000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-wppi): New variable. --- gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ce1e23f0bf..9d6c7cd5a3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9315,6 +9315,45 @@ (define-public r-xcms data for high-throughput, untargeted analyte profiling.") (license license:gpl2+))) +(define-public r-wppi + (package + (name "r-wppi") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "wppi" version)) + (sha256 + (base32 + "1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23")))) + (properties `((upstream-name . "wppi"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) + (propagated-inputs (list r-dplyr + r-igraph + r-logger + r-magrittr + r-matrix + r-omnipathr + r-progress + r-purrr + r-rcurl + r-rlang + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/AnaGalhoz37/wppi") + (synopsis "Weighting protein-protein interactions") + (description + "This package predicts functional relevance of protein-protein +interactions based on functional annotations such as Human Protein Ontology and +Gene Ontology, and prioritizes genes based on network topology, functional +scores and a path search algorithm.") + (license license:expat))) + (define-public r-wrench (package (name "r-wrench") -- 2.34.0