King, Spencer wrote 2 weeks ago
(name . King, Spencer via Guix-patches via)(address . guix-patches@gnu.org)(name . Ricardo Wurmus)(address . rekado@elephly.net)(name . laurent.gatto@gmail.com)(address . laurent.gatto@gmail.com)(name . zimon.toutoune@gmail.com)(address . zimon.toutoune@gmail.com)
CH3PR02MB9746187DE387149CB09532DE90CC2@CH3PR02MB9746.namprd02.prod.outlook.com
From 6e6e7521eac6cfd2227946eebcc85c68438fd0b8 Mon Sep 17 00:00:00 2001
From: Spencer King <spencer.king@wustl.edu>
Date: Fri, 14 Feb 2025 17:20:25 -0600
Subject: [PATCH] gnu: Add r-randomforestexplainer.
* gnu/packages/cran.scm (r-randomforestexplainer): New variable.
Change-Id: I9236716971219c55850440f8cbae022f5641eebc
---
gnu/packages/cran.scm | 38 +++++++++++++++++++++++++++++++++++++-
1 file changed, 37 insertions(+), 1 deletion(-)
Toggle diff (60 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3d6ea6be28..863ef26af3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -38,7 +38,7 @@
;;; Copyright © 2022-2024 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
;;; Copyright © 2024 Marco Baggio <guix@mawumag.com>
-;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
+;;; Copyright © 2024, 2025 Spencer King <spencer.king@geneoscopy.com>
;;; Copyright © 2024 Tor-björn Claesson <tclaesson@gmail.com>
;;;
;;; This file is part of GNU Guix.
@@ -43999,6 +43999,42 @@ (define-public r-gsalib
for variant discovery in high-throughput sequencing data.")
(license license:expat)))
+(define-public r-randomforestexplainer
+ (package
+ (name "r-randomforestexplainer")
+ (version "0.10.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "randomForestExplainer" version))
+ (sha256
+ (base32 "1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"))))
+ (properties `((upstream-name . "randomForestExplainer")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-data-table
+ r-dplyr
+ r-dt
+ r-ggally
+ r-ggplot2
+ r-ggrepel
+ r-randomforest
+ r-ranger
+ r-reshape2
+ r-rmarkdown))
+ (native-inputs (list r-knitr r-testthat))
+ (home-page "https://github.com/ModelOriented/randomForestExplainer")
+ (synopsis
+ "Explaining and Visualizing Random Forests in Terms of Variable Importance")
+ (description
+ "This package provides a set of tools to help explain which variables are most
+important in a random forests. Various variable importance measures are
+calculated and visualized in different settings in order to get an idea on how
+their importance changes depending on our criteria (Hemant Ishwaran and Udaya B.
+Kogalur and Eiran Z. Gorodeski and Andy J. Minn and Michael S. Lauer (2010)
+<doi:10.1198/jasa.2009.tm08622>, Leo Breiman (2001)
+<doi:10.1023/A:1010933404324>).")
+ (license (list license:gpl2+ license:gpl3+))))
+
(define-public r-randomforestsrc
(package
(name "r-randomforestsrc")
base-commit: 4b5f0408e66392ab745dc0f7830732217d88f17d
--
2.41.0