Navid Afkhami wrote 3 weeks ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
7d654d4783b694b7e72a8f5f53ae4b369a8b69ac.1740152190.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-pygam): New variable.
Change-Id: I0bdd26546b17e3e0f96a32c6de9674d1731ba978
---
gnu/packages/bioinformatics.scm | 43 +++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
Toggle diff (58 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index af8756af09..3247d6dcc3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3579,6 +3579,49 @@ (define-public python-pybio
the managed genomes, STAR indexing and mapping and more.")
(license license:gpl3+))))
+(define-public python-pygam
+ (package
+ (name "python-pygam")
+ (version "0.9.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/dswah/pyGAM")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1bv404idswsm2ay3yziq1i2cbydq4f3vjav5s4i15bgd13k7zvim"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'patch-pyproject
+ (lambda _
+ (substitute* "pyproject.toml"
+ ;; Change build backend
+ (("build-backend = .*") "build-backend = \"poetry.core.masonry.api\"\n")
+ ;; Modify version field
+ (("^version = \"0.0.0\"")
+ (string-append "version = \"" #$version "\""))))))))
+ (propagated-inputs (list python-black
+ python-flake8
+ python-ipython
+ python-numpy
+ python-pandas
+ python-poetry-core
+ python-progressbar2
+ python-scipy))
+ (native-inputs (list python-mock python-pytest python-pytest-cov))
+ (home-page "https://github.com/dswah/pyGAM")
+ (synopsis "Generalized additive models in Python")
+ (description
+ "This tool is for building Generalized Additive Models in Python.
+It emphasizes modularity and performance.The API will be immediately familiar
+to anyone with experience of scikit-learn or scipy.")
+ (license license:asl2.0)))
+
(define-public python-pysnptools
(package
(name "python-pysnptools")
base-commit: a036a455da1c91282ac2c6a7ca9757ee2e8ba107
--
2.43.0