Navid Afkhami wrote 2 months ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
9ba8e9eb988b67d495e168ae4f54bf85ea3b73ff.1737536954.git.navid.afkhami@mdc-berlin.de
* gnu/packages/cran.scm (r-phytools): New variable.
Change-Id: Ie4fa9f40febf3b114a3da38b9cdf668e8ac415ca
---
gnu/packages/cran.scm | 45 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
Toggle diff (60 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 936f3cf593..7f822be32a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -38153,6 +38153,51 @@ (define-public r-phylogram
across a wide array of bioinformatic R packages.")
(license license:gpl3)))
+(define-public r-phytools
+ (package
+ (name "r-phytools")
+ (version "2.4-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "phytools" version))
+ (sha256
+ (base32 "1i25dlikdx9av5653ra2709sjm9fc3fsis1yfsb7zagivi408ph9"))))
+ (properties `((upstream-name . "phytools")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ape
+ r-clustergeneration
+ r-coda
+ r-combinat
+ r-deoptim
+ r-doparallel
+ r-expm
+ r-foreach
+ r-maps
+ r-mass
+ r-mnormt
+ r-nlme
+ r-numderiv
+ r-optimparallel
+ r-phangorn
+ r-scatterplot3d))
+ (home-page "https://github.com/liamrevell/phytools")
+ (synopsis "Phylogenetic tools for comparative biology")
+ (description
+ "This package offers extensive tools for phylogenetic analysis.
+It focuses on phylogenetic comparative biology but also includes methods for
+visualizing, analyzing, manipulating, reading, writing, and inferring phylogenetic
+trees. Functions for comparative biology include ancestral state reconstruction,
+model fitting, and phylogeny and trait data simulation. A broad range of plotting
+methods includes mapping trait evolution on trees, projecting trees into phenotype
+space or geographic maps, and visualizing correlated speciation between trees.
+Additional functions allow for reading, writing, analyzing, inferring, simulating,
+and manipulating phylogenetic trees and comparative data. Examples include computing
+consensus trees, simulating trees and data under various models, and attaching species
+or clades to a tree either randomly or non-randomly. This package provides numerous tools
+for tree manipulations and analyses that are valuable for phylogenetic research.")
+ (license license:gpl2+)))
+
(define-public r-kmer
(package
(name "r-kmer")
base-commit: 309ad9fcdacf732691f0220c4122757d9940b97d
--
2.43.0