Navid Afkhami wrote 4 months ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
965e7c3c960b7d8808a39c6d50d00dc4a268398f.1731077298.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-harmonypy): New variable.
Change-Id: Iad8be627099858776163fccfeb27c08129e6fb75
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 35ff96ce42..3b393acce2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2397,6 +2397,32 @@ (define-public python-doubletdetection
from single-cell RNA-sequencing.")
(license license:expat)))
+(define-public python-harmonypy
+ (package
+ (name "python-harmonypy")
+ (version "0.0.10")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/slowkow/harmonypy")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "15lxgncrnsx1hapfx78pvx4rjx5d48hqixdnacdy55d84myfmrym"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-hatchling
+ python-numpy
+ python-pandas
+ python-scikit-learn
+ python-scipy))
+ (native-inputs (list python-pytest))
+ (home-page "https://github.com/slowkow/harmonypy")
+ (synopsis "Data integration algorithm")
+ (description
+ "Harmony is an algorithm for integrating multiple high-dimensional datasets.")
+ (license license:gpl2)))
+
(define-public python-hclust2
(package
(name "python-hclust2")
base-commit: 2a6d96425eea57dc6dd48a2bec16743046e32e06
prerequisite-patch-id: 8f31c5ea3685b59fb6907a9582c0ca537c9c38bd
prerequisite-patch-id: e9f28e6ac20c9572b3cc53ab09c4083161bfdf8d
--
2.43.0