Navid Afkhami wrote 4 months ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
797d9d30ec2c66d2e4eed6f9e6893a855c5189e3.1730825398.git.navid.afkhami@mdc-berlin.de
* gnu/packages/cran.scm (r-seuratextend): New variable.
Change-Id: I9ce0d90a2f05d4e074459046c380849cf9f63978
---
gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
Toggle diff (63 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ab369c116c..b312c30099 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -38320,6 +38320,53 @@ (define-public r-scattermore
data to rasters. It speeds up plotting of data with millions of points.")
(license license:gpl3+)))
+(define-public r-seuratextend
+ (let ((commit "5382e921f7b365c7b75b20d07cb455e4390fe36f")
+ (revision "1"))
+ (package
+ (name "r-seuratextend")
+ (version (git-version "1.0.7" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/huayc09/SeuratExtend")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1rlx20jyfdrymxn8b9dsf9n9jk9rwjjx1wy2f00layvd57g9ch2q"))))
+ (properties `((upstream-name . "SeuratExtend")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocmanager
+ r-dplyr
+ r-ggplot2
+ r-ggpubr
+ r-glue
+ r-hdf5r
+ r-magrittr
+ r-mosaic
+ r-purrr
+ r-remotes
+ r-reshape2
+ r-reticulate
+ r-rlist
+ r-scales
+ r-seurat
+ r-seuratextenddata
+ r-seuratobject
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/huayc09/SeuratExtend")
+ (synopsis "Enhanced toolkit for scRNA-seq analysis")
+ (description
+ "This package is designed to improve and simplify the analysis of scRNA-seq data.
+It uses the Seurat object for this purpose. It provides an array of
+enhanced visualization tools, an integrated functional and pathway
+analysis pipeline, seamless integration with popular Python tools,
+and a suite of utility functions to aid in data manipulation and
+presentation.")
+ (license license:gpl3+))))
+
(define-public r-seuratextenddata
(let ((commit "e7f17d4bacca436705b06b2cd0c879f83add9271")
(revision "1"))
base-commit: 4c56d0cccdc44e12484b26332715f54768738c5f
prerequisite-patch-id: 8f31c5ea3685b59fb6907a9582c0ca537c9c38bd
--
2.43.0