(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
ad9beaa27782d99569b568cf4001f2d111955c37.1730315311.git.navid.afkhami@mdc-berlin.de
* gnu/packages/cran.scm (r-raceid): New variable.
Change-Id: I337463c66040179f5a4a1622fb759a87ebd2344a
---
gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
Toggle diff (66 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6c0861509d..1c2efc6b4c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13107,6 +13107,53 @@ (define-public r-shinyace
environment within Shiny.")
(license license:expat)))
+(define-public r-raceid
+ (package
+ (name "r-raceid")
+ (version "0.3.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RaceID" version))
+ (sha256
+ (base32 "0zqas0dfsvcbjzv2b83zy13pxyzfhh81xrfbzxq8a7ykk0nyrx26"))))
+ (properties `((upstream-name . "RaceID")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-cluster
+ r-coop
+ r-fateid
+ r-fnn
+ r-fpc
+ r-ggplot2
+ r-harmony
+ r-ica
+ r-igraph
+ r-irlba
+ r-leiden
+ r-locfit
+ r-mass
+ r-matrix
+ r-matrixstats
+ r-pheatmap
+ r-princurve
+ r-quadprog
+ r-randomforest
+ r-rcolorbrewer
+ r-rcpp
+ r-rtsne
+ r-runner
+ r-umap
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://cran.r-project.org/package=RaceID")
+ (synopsis
+ "Algorithm for inferring cell types from single-cell RNA-seq data")
+ (description
+ "This tool provides an algorithm to identify rare cell types in single-cell data.
+It also identifies abundant cell types. The method is based on transcript
+counts obtained with unique molecular identifies.")
+ (license license:gpl3)))
+
(define-public r-rafalib
(package
(name "r-rafalib")
base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4
prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432
prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57
prerequisite-patch-id: 3904682af2961b8cb06ced06ab62c60604114dad
prerequisite-patch-id: 0e861c88ccc360c3a1bcd0ce92d90a9aeb1455c0
--
2.43.0