Afkhami, Navid wrote 6 months ago
(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
c335fa0c0f0b5403713e23f409d12fe3d8d147bb.1727347038.git.Navid.Afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-cellchat-v2): New variable.
Change-Id: Iae15f373aefa1c2a0899d5271cf8dddbbfdfa2bd
---
gnu/packages/bioinformatics.scm | 66 +++++++++++++++++++++++++++++++++
1 file changed, 66 insertions(+)
Toggle diff (81 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ad7baad590..91cf6a0e2b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14315,6 +14315,72 @@ (define-public r-cellchat
communication networks from scRNA-seq data.")
(license license:gpl3))))
+(define-public r-cellchat-v2
+ (let ((commit "b05405af0f4f2cac99f2211e888d42de4c5a9d59")
+ (revision "1"))
+ (package
+ (name "r-cellchat-v2")
+ (version (git-version "2.1.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/jinworks/CellChat")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "14s7bl70xi21ivqr1c3qx6kjf1ndlyxag880xldqkfsqpksvyvkc"))
+ (snippet '(for-each delete-file
+ '("src/CellChat.so" "src/CellChat_Rcpp.o"
+ "src/RcppExports.o")))))
+ (properties `((upstream-name . "CellChat")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocgenerics
+ r-biocneighbors
+ r-bslib
+ r-circlize
+ r-colorspace
+ r-complexheatmap
+ r-cowplot
+ r-dplyr
+ r-fnn
+ r-future
+ r-future-apply
+ r-ggalluvial
+ r-ggnetwork
+ r-ggplot2
+ r-ggpubr
+ r-ggrepel
+ r-igraph
+ r-irlba
+ r-magrittr
+ r-matrix
+ r-nmf
+ r-patchwork
+ r-pbapply
+ r-plotly
+ r-plyr
+ r-rcolorbrewer
+ r-rcpp
+ r-rcppeigen
+ r-reshape2
+ r-reticulate
+ r-rspectra
+ r-scales
+ r-shape
+ r-shiny
+ r-sna
+ r-stringr
+ r-svglite))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/jinworks/CellChat")
+ (synopsis
+ "Inference of cell-cell communication from single-cell and transcriptomics")
+ (description
+ "This R tool infers, visualizes, and analyzes cell-cell communication networks.
+It supports scRNA-seq and spatially resolved transcriptomics data.")
+ (license license:gpl3))))
+
(define-public r-copykat
(let ((commit ;no tag
"256de33dfc1b80a1a0ac9e098c5557f95a4e0d53")
base-commit: f6715a4715eaed485300dffffa1b5e182ded3cea
--
2.34.1