(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
1449c6e9bfd444ebe80b8dc4098110ad7ead5d5e.1726236572.git.Navid.Afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-scdesign2): New variable.
Change-Id: I25599df1cb8493bc2d9cc1839b5232aee03bf848
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
Toggle diff (42 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4653360792..8b722f7bf2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1184,6 +1184,33 @@ (define-public r-rhtslib12
developers of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+))))
+(define-public r-scdesign2
+ (let ((commit "554f2c4b1a7ee6cc04969a287df9b3b77d7bb2fe")
+ (revision "1"))
+ (package
+ (name "r-scdesign2")
+ (version (git-version "1.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JSB-UCLA/scDesign2")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "09zkz6qdcx54092ab6761ja3pclax9xzana8dk8qvxrdbjshb8p7"))))
+ (properties `((upstream-name . "scDesign2")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-mass r-pscl))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/JSB-UCLA/scDesign2")
+ (synopsis "Statistical simulator for scRNA-seq with gene correlation")
+ (description
+ "This package offers a flexible statistical simulator for scRNA-seq data.
+It can generate data that captures gene correlation. Additionally, it allows
+for varying the number of cells and sequencing depth.")
+ (license license:expat))))
+
(define-public r-scenic
(let ((commit "cedf8490a634da550cea2c831544e5f7f14467d2")
(revision "1"))
base-commit: 98bc13b9ea5f22a60de6c289d59072638001e08e
--
2.34.1