Afkhami, Navid wrote 7 months ago
(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
02122b27950c60f55dbfa860ebaf750c7ba8a360.1724141223.git.Navid.Afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-spacexr): New variable.
Change-Id: Icf2a7dd9d637d14d835c7a428093ba8daf25e25a
---
gnu/packages/bioinformatics.scm | 45 +++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
Toggle diff (62 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index eae0a29b90..56188309a8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22662,6 +22662,51 @@ (define-public r-catch
value of physical insulation between neighboring domains.")
(license license:gpl2+))))
+(define-public r-spacexr
+ (let ((commit "0a0861e3d1e16014a20e9b743d0e19d3b42231f3")
+ (revision "1"))
+ (package
+ (name "r-spacexr")
+ (version (git-version "2.2.1" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/dmcable/spacexr")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0hqrllzq2hi6dsr8nykn1yp7s3rcbjrv3m624b61n4nxnzza458a"))))
+ (properties `((upstream-name . "spacexr")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-compquadform
+ r-data-table
+ r-doparallel
+ r-dplyr
+ r-fields
+ r-foreach
+ r-ggplot2
+ r-knitr
+ r-locfdr
+ r-matrix
+ r-metafor
+ r-mgcv
+ r-pals
+ r-quadprog
+ r-readr
+ r-reshape2
+ r-rfast
+ r-rmarkdown
+ r-tibble))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/dmcable/spacexr")
+ (synopsis
+ "Cell type identification and differential expression in spatial transcriptomics")
+ (description
+ "This package is used for cell type identification in spatial transcriptomics.
+It also handles cell type-specific differential expression.")
+ (license license:gpl3))))
+
(define-public r-spectre
(let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a")
(revision "1"))
base-commit: 58faaf4eaadafa09a97ab31103eb54bd2076a699
prerequisite-patch-id: dc2f4964edf0016b1e572e9f41129606c4fb3132
prerequisite-patch-id: 4ce0ef474ba0015be3d30c7eec8f094098beaec7
--
2.34.1