Afkhami, Navid wrote 9 months ago
(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
cd1df6868c6ab368e11f2e9882f08e60f378fbf7.1718809366.git.Navid.Afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-anpan): New variable.
Change-Id: Ia01ba3be7424306674b9c9b2904f1f0cfa66d818
---
gnu/packages/bioinformatics.scm | 48 +++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
Toggle diff (65 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e2632a5aa4..8ffc46d86d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -752,6 +752,54 @@ (define-public r-anndatar
@code{SingleCellExperiment} and Seurat objects.")
(license license:expat))))
+(define-public r-anpan
+ (let ((commit "286b88dcf5e9e963a595482139aade154ee1dc86")
+ (revision "1"))
+ (package
+ (name "r-anpan")
+ (version (git-version "0.3.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/biobakery/anpan")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "10nw5v69gn4pxb4g5gd8nh9r1ywd6yczapl3dpdfms0434wcmkxm"))))
+ (properties `((upstream-name . "anpan")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ape
+ r-cmdstanr
+ r-data-table
+ r-dplyr
+ r-fastglm
+ r-furrr
+ r-future
+ r-ggdendro
+ r-ggnewscale
+ r-ggplot2
+ r-loo
+ r-mass
+ r-patchwork
+ r-phylogram
+ r-posterior
+ r-progressr
+ r-purrr
+ r-r-utils
+ r-stringr
+ r-tibble
+ r-tidyselect))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/biobakery/anpan")
+ (synopsis "Quantifying microbial strain-host associations")
+ (description
+ "The goal of anpan is to consolidate statistical methods for strain analysis.
+This includes automated filtering of metagenomic functional profiles, testing genetic
+elements for association with outcomes, phylogenetic association testing, and
+pathway-level random effects models.")
+ (license license:expat))))
+
(define-public r-bedtorch
(let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea")
(revision "1"))
base-commit: c551e406a75273583ae3fef92f32468f905cc07f
prerequisite-patch-id: 70095eccc2035390725bf119749d138d609d2b83
prerequisite-patch-id: 016f9a35b1da6b5916599f4cc6616fc9738c2b46
--
2.34.1