Afkhami, Navid wrote 9 months ago
(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
f0b4e2889d976e74c3527bc6a4a85d8446027e12.1718808804.git.Navid.Afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-cmdstanr): New variable.
Change-Id: Ic9e83486f7ab7f0e7075343af630c4dcecf597b5
---
gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
Toggle diff (52 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cdda029809..e2632a5aa4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11534,6 +11534,43 @@ (define-public r-chromunity
Pore-C concatemers.")
(license license:gpl3))))
+(define-public r-cmdstanr
+ (let ((commit "a45d4f7d686aa6b57ce25f342a71eea79507f01c")
+ (revision "1"))
+ (package
+ (name "r-cmdstanr")
+ (version (git-version "0.8.1.9000" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/stan-dev/cmdstanr")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "01vyh3sy704rs7yvaka2hp6vld0mdl7hbrs20dpbwidgm4ksrvsi"))))
+ (properties `((upstream-name . "cmdstanr")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-checkmate
+ r-data-table
+ r-jsonlite
+ r-posterior
+ r-processx
+ r-r6
+ r-rlang
+ r-withr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/stan-dev/cmdstanr")
+ (synopsis "R interface to 'CmdStan'")
+ (description
+ "This package provides a lightweight interface to Stan <https://mc-stan.org>.
+The @code{CmdStanR} interface is an alternative to RStan that calls the command
+line interface for compilation and running algorithms instead of interfacing
+with C++ via Rcpp'. This has many benefits including always being compatible
+with the latest version of Stan, fewer installation errors, fewer unexpected
+crashes in RStudio, and a more permissive license.")
+ (license license:bsd-3))))
+
(define-public r-dnamcrosshyb
;; There aren't any releases.
(let ((commit "fe8acb33667e81f00dcb84e0fa75c87ab2db5d8f")
base-commit: da1f3aff2ea9a98651ebc69c8385ba136fe2e325
--
2.34.1