Afkhami, Navid wrote 9 months ago
(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
1cbabc55454dc7d6042ddd9d322cc14d5f8f71fe.1718034097.git.Navid.Afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-rphyloxml): New variable.
Change-Id: I5b799986064f2af5fe74454f2e78fea7d9947260
---
gnu/packages/bioinformatics.scm | 43 +++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
Toggle diff (58 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cecd94bbb7..3282258b48 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14096,6 +14096,49 @@ (define-public sambamba
sort, markdup, and depth.")
(license license:gpl2+)))
+(define-public r-rphyloxml
+ (let ((commit "a30e39249239b2de01d6964ae2a2205a6c48b475")
+ (revision "1"))
+ (package
+ (name "r-rphyloxml")
+ (version (git-version "0.0-9000" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/USCbiostats/rphyloxml")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "15ijzqvjxx6vqyqlg5asdbqlhw1g0ix6palf1rism3si0qapddgw"))))
+ (properties `((upstream-name . "rphyloxml")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:modules '((guix build r-build-system)
+ (guix build minify-build-system)
+ (guix build utils)
+ (ice-9 match))
+ #:imported-modules `(,@%r-build-system-modules (guix build
+ minify-build-system))
+ #:phases '(modify-phases %standard-phases
+ (add-after 'unpack 'process-javascript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (with-directory-excursion "inst/"
+ (for-each (match-lambda
+ ((source . target) (minify source
+ #:target
+ target)))
+ '())))))))
+ (propagated-inputs (list r-ape r-xml2))
+ (native-inputs (list esbuild))
+ (home-page "https://github.com/USCbiostats/rphyloxml")
+ (synopsis "Read and write phyloXML files in R")
+ (description
+ "The package reads phylogenetic data in the @code{phyloXML} format.
+It also includes functions for writing data in this format.")
+ (license license:expat))))
+
(define-public ritornello
(package
(name "ritornello")
base-commit: 2b2337f275a6421a0d0964c54987df4ac74162e6
--
2.34.1