[PATCH] gnu: Add r-topdom.

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  • Afkhami, Navid
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Afkhami, Navid
Afkhami, Navid wrote on 3 Jun 16:47 +0200
(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
* gnu/packages/cran.scm (r-topdom): New variable.

Change-Id: I63d265470499affc8f0de94f88739c6631281a0d
gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)

Toggle diff (41 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 16a864be93..b0ccee37bb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -31108,6 +31108,30 @@ (define-public r-tolerance
Visualizations are also available for most of these settings.")
(license license:gpl2+)))
+(define-public r-topdom
+ (package
+ (name "r-topdom")
+ (version "0.10.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "TopDom" version))
+ (sha256
+ (base32 "1rryfnwvdlpdrjgs6sciy91cxfp4jykll0swclasydjvj4n642i6"))))
+ (properties `((upstream-name . "TopDom")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ggplot2 r-matrixstats r-reshape2 r-tibble))
+ (home-page "https://github.com/HenrikBengtsson/TopDom")
+ (synopsis "Efficient method for Identifying genomic topological domains")
+ (description
+ "This method identifies topological domains in genomes from Hi-C sequence data.
+The authors published an implementation of their method as an R script. This package
+originates from those original @code{TopDom} R scripts and provides help pages adopted
+from the original @code{TopDom} PDF documentation. It also provides a small number of
+bug fixes to the original code.")
+ ;; Either version of the GPL
+ (license (list license:gpl2 license:gpl3))))
;; Keep this in sync with the liblantern package.
(define-public r-torch

base-commit: 1615084a9a4115d48b75b3db048761e7534efc87
prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d
prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b
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