[PATCH 00/92] python-team patches

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2 participants
  • Nicolas Goaziou
  • Nicolas Graves
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unassigned
Submitted by
Nicolas Graves
Severity
normal
N
N
Nicolas Graves wrote on 10 May 00:40 +0200
(address . guix-patches@gnu.org)(address . ngraves@ngraves.fr)
20240509224942.19947-1-ngraves@ngraves.fr
This patch series contains prerequisite patches for an upcoming series
to remove unwanted python nativeinputs. It should go to the
python-team branch, and contains various types of fixes or updates.

Please feel free to rewrite commit messages or amend patches for a minor change.

Nicolas Graves (92):
gnu: python-seaborn: Correct dependencies.
gnu: python-transient: Move to pyproject-build-system.
gnu: python-black: Move to pyproject-build-system.
gnu: python-isort: Move to pyproject-build-system.
gnu: python-codespell: Improve package style.
gnu: python-mutagen: Move to pyproject-build-system.
gnu: python-http-ece: Update to 1.2.0.
gnu: python-zope-i18nmessageid: Update to 5.1.1.
gnu: python-aionotify: Update to 0.3.0.
gnu: vdirsyncer: Move to pyproject-build-system and enable tests.
gnu: python-django-localflavor: Move to pyproject-build-system.
gnu: python-docker-pycreds: Move to pyproject-build-system.
gnu: Add xcffibgen.
gnu: Add ghc-language-python.
gnu: python-xcffib: Move to (gnu packages xorg).
gnu: qtile: Update to 0.23.0.
gnu: qtile: Improve package style.
gnu: sshuttle: Move to pyproject-build-system.
gnu: python-apiron: Move to pyproject-build-system.
gnu: python-alembic: Move to pyproject-build-system.
gnu: conda: Move to pyproject-build-system.
gnu: conda: Reindent.
gnu: python-conda-package-handling: Move to pyproject-build-system.
gnu: python-scikit-rf: Fix tests.
gnu: gunicorn: Move to pyproject-build-system.
gnu: python-arrow: Move to pyproject-build-system.
gnu: dynaconf: Improve package style.
gnu: zulip-term: Move to pyproject-build-system.
gnu: python-pypujs: Improve package style.
gnu: python-dateutil: Move to pyproject-build-system.
gnu: python-nbval: Move to pyproject-build-system.
gnu: python-asdf-astropy: Fix build.
gnu: python-pytest-runner: Improve package style.
gnu: gunicorn: Update to 21.2.0.
gnu: python-unidecode: Update to 1.3.8.
gnu: python-cbor2: Move to pyproject-build-system.
gnu: python-tinycss: Move to pyproject-build-system.
gnu: behave: Move to pyproject-build-system.
gnu: python-cucumber-tag-expressions: Move to pyproject-build-system.
gnu: python-flask-login: Move to pyproject-build-system.
gnu: python-parse-type: Move to pyproject-build-system.
gnu: python-amqp: Move to pyproject-build-system.
gnu: python-cbor: Update home-page.
gnu: python-sphinx: Ignore failing tests.
gnu: python-sphinx-autodoc-typehints: Move to pyproject-build-system.
gnu: abjad: Update to 3.19.
gnu: abjad-ext-rmakers: Update to 3.19.
gnu: abjad-ext-nauert: Update to 3.19.
gnu: python-pytest-remotedata: Ignore failing test.
gnu: python-pytest-toolbox: Move to pyproject-build-system.
gnu: python-cairosvg: Move to pyproject-build-system.
gnu: python-docspec-python: Move to pyproject-build-system.
gnu: python-jaraco-classes: Move to pyproject-build-system.
gnu: python-jaraco-context: Move to pyproject-build-system.
gnu: python-jaraco-functools: Move to pyproject-build-system.
gnu: python-jaraco-packaging: Move to pyproject-build-system.
gnu: python-jaraco-test: Move to pyproject-build-system.
gnu: python-nbstripout: Move to pyproject-build-system.
gnu: Add ghc-xcb-types.
gnu: python-sparse: Move to pyproject-build-system.
gnu: python-pytest-enabler: Break dependency cycle.
gnu: python-pint: Disable benchmark tests.
gnu: python-apprise: Improve package style.
gnu: python-autoflake: Update to 2.3.1.
gnu: python-orderedmultidict: Move to pyproject-build-system.
gnu: python-shtab: Move to pyproject-build-system.
gnu: python-flake8-isort: Move to pyproject-build-system.
gnu: python-xmltodict: Move to pyproject-build-system.
gnu: python-rich: Update to 13.7.1.
gnu: python-cmd2: Move to pyproject-build-system.
gnu: Add python-sphinx-autodoc-typehints-5.
gnu: python-uqbar: Improve package style.
gnu: python-uqbar: Upgrade to python-team branch.
gnu: python-uqbar: Update to 0.6.9.
gnu: python-typeguard-4: Ignore failing tests.
gnu: python-zope-i18nmessageid: Move to pyproject-build-system.
gnu: python-funsor: Ignore flaky test.
gnu: borgmatic: Move to pyproject-build-system.
gnu: tuir: Move to pyproject-build-system.
gnu: python-pytest-trio: Move to pyproject-build-system.
gnu: python-fenics-dijitso: Move to pyproject-build-system.
gnu: python-pyan3: Move to pyproject-build-system.
gnu: python-numpydoc: Move to pyproject-build-sytem.
gnu: python-multidict: Move to pyproject-build-system.
gnu: python-warcio: Move to pyproject-build-system.
gnu: python-certauth: Move to pyproject-build-system.
gnu: python-matplotlib: Ignore failing tests.
gnu: python-qemu-qmp: Improve package style.
gnu: python-qemu-qmp: Move to pyproject-build-system.
gnu: python-cssselect2: Move to pyproject-build-system.
gnu: python-notebook: Add python-jupyter-server native-input.
build-system/pyproject: Add missing native-inputs.

gnu/local.mk | 2 -
gnu/packages/astronomy.scm | 27 +-
gnu/packages/backup.scm | 14 +-
gnu/packages/bioinformatics.scm | 9 +-
gnu/packages/check.scm | 102 +--
gnu/packages/databases.scm | 8 +-
gnu/packages/dav.scm | 14 +-
gnu/packages/django.scm | 23 +-
gnu/packages/docker.scm | 18 +-
gnu/packages/engineering.scm | 6 +
gnu/packages/graphviz.scm | 31 +-
gnu/packages/haskell-xyz.scm | 25 +
gnu/packages/jupyter.scm | 33 +-
gnu/packages/machine-learning.scm | 6 +-
gnu/packages/messaging.scm | 23 +-
gnu/packages/music.scm | 69 +--
gnu/packages/package-management.scm | 216 ++++---
.../python-aionotify-0.2.0-py3.8.patch | 48 --
.../patches/python-uqbar-python3.10.patch | 23 -
gnu/packages/python-check.scm | 122 ++--
gnu/packages/python-crypto.scm | 2 +-
gnu/packages/python-science.scm | 4 +-
gnu/packages/python-web.scm | 186 +++---
gnu/packages/python-xyz.scm | 585 ++++++------------
gnu/packages/serialization.scm | 4 +-
gnu/packages/simulation.scm | 21 +-
gnu/packages/sphinx.scm | 30 +-
gnu/packages/syndication.scm | 21 +-
gnu/packages/terminals.scm | 2 +-
gnu/packages/time.scm | 49 +-
gnu/packages/version-control.scm | 2 +
gnu/packages/virtualization.scm | 39 +-
gnu/packages/vpn.scm | 12 +-
gnu/packages/wm.scm | 103 +--
gnu/packages/xml.scm | 7 +-
gnu/packages/xorg.scm | 101 +++
36 files changed, 860 insertions(+), 1127 deletions(-)
delete mode 100644 gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch
delete mode 100644 gnu/packages/patches/python-uqbar-python3.10.patch

--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:52 +0200
[PATCH 01/92] gnu: python-seaborn: Correct dependencies.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-1-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-seaborn): Correct dependencies.
[propagated-inputs]: Move python-ipykernel, python-mypy,
python-nbconvert, python-numpydoc, python-pyyaml from here...
[native-inputs]: ... to here.

Change-Id: I94a28f0cb8ec7c2171007f2b635dc10d7a8fcc8c
---
gnu/packages/python-xyz.scm | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)

Toggle diff (36 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6fbc6f55591..c1590c2b568 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -13834,22 +13834,22 @@ (define-public python-seaborn
"0ycibcs6kvd3xi4zsxna81claqifyb9dn6z6jwc5x7lqqplnbbdz"))))
(build-system pyproject-build-system)
(propagated-inputs
- (list python-ipykernel
- python-matplotlib
- python-mypy
- python-nbconvert
+ (list python-matplotlib
python-numpy
- python-numpydoc
python-pandas
- python-pyyaml
python-scipy
python-statsmodels))
(native-inputs
(list python-flake8
python-flit-core
+ python-ipykernel
+ python-nbconvert
+ python-numpydoc
+ python-mypy
python-pytest
python-pytest-cov
- python-pytest-xdist))
+ python-pytest-xdist
+ python-pyyaml))
(home-page "https://seaborn.pydata.org/")
(synopsis "Statistical data visualization")
(description
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:52 +0200
[PATCH 03/92] gnu: python-black: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-3-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-black): Improve package style.
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Improve style of use-absolute-file-names
phase. Remove phase check.

Change-Id: If2da4b3b0fea4928d1aeb270fbaa4167f20a6ee5
---
gnu/packages/python-xyz.scm | 18 ++++++------------
1 file changed, 6 insertions(+), 12 deletions(-)

Toggle diff (35 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c1590c2b568..862efc0f5b5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8262,22 +8262,16 @@ (define-public python-black
(sha256
(base32
"0yfahlqc7dsdp1js0cbv706apldnfnlbal9b53cww8n0hs40n0im"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'patch-source-shebangs 'use-absolute-file-names
- (lambda* (#:key native-inputs inputs #:allow-other-keys)
- (let* ((inpts (or native-inputs inputs))
- (python3 (search-input-file inpts "/bin/python3")))
- (substitute* (find-files "tests" "\\.py$")
- (("#!/usr/bin/env python3(\\.[0-9]+)?" _ minor-version)
- (string-append "#!" python3 (if (string? minor-version)
- minor-version
- "")))))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests? (invoke "pytest" "-vv")))))))
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* (find-files "tests" "\\.py$")
+ (("#!/usr/bin/env python3")
+ (string-append
+ "#!" (search-input-file inputs "/bin/python3")))))))))
(propagated-inputs
(list python-click
python-attrs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:52 +0200
[PATCH 02/92] gnu: python-transient: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-2-ngraves@ngraves.fr
* gnu/packages/virtualization.scm (python-transient)[build-system]:
Move to pyproject-build-system.

Change-Id: I29969738f862ea26fbaa9cb7642f98336f37c583
---
gnu/packages/virtualization.scm | 16 +++++++---------
1 file changed, 7 insertions(+), 9 deletions(-)

Toggle diff (57 lines)
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index da65b48dc27..c886c7489a7 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -32,6 +32,7 @@
;;; Copyright © 2023 Ahmad Draidi <a.r.draidi@redscript.org>
;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2023, 2024 Hartmut Goebel <h.goebel@crazy-compilers.com>
+;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -144,6 +145,7 @@ (define-module (gnu packages virtualization)
#:use-module (guix build-system gnu)
#:use-module (guix build-system go)
#:use-module (guix build-system meson)
+ #:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
#:use-module (guix build-system ruby)
#:use-module (guix build-system trivial)
@@ -2787,9 +2789,8 @@ (define-public python-transient
(method url-fetch)
(uri (pypi-uri "transient" version))
(sha256
- (base32
- "148yiqrmcscsi6787y0f27i1y9cf0gcw3mqfv5frhpmsmv62mv5z"))))
- (build-system python-build-system)
+ (base32 "148yiqrmcscsi6787y0f27i1y9cf0gcw3mqfv5frhpmsmv62mv5z"))))
+ (build-system pyproject-build-system)
(arguments
`(#:tests? #f ; Requires behave
#:phases (modify-phases %standard-phases
@@ -2797,8 +2798,7 @@ (define-public python-transient
(lambda _
(substitute* "setup.py"
(("==")
- ">="))
- #t)))))
+ ">=")))))))
(propagated-inputs
(list python-beautifultable
python-click
@@ -2810,10 +2810,8 @@ (define-public python-transient
python-toml))
(native-inputs
(list python-black python-mypy python-pyhamcrest python-twine))
- (home-page
- "https://github.com/ALSchwalm/transient")
- (synopsis
- "QEMU Wrapper written in Python")
+ (home-page "https://github.com/ALSchwalm/transient")
+ (synopsis "QEMU Wrapper written in Python")
(description
"@code{transient} is a wrapper for QEMU allowing the creation of virtual
machines with shared folder, ssh, and disk creation support.")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:52 +0200
[PATCH 04/92] gnu: python-isort: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-4-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-isort):
[build-system]: Move to pyproject-build-system.
[arguments]<#:test-flags>: Add option to replace former check phase.
<#:phases>: Remove phases build, install and check.

Change-Id: Idac8f151977f2494eb44d51aa1fcbf3156b5cc87
---
gnu/packages/python-xyz.scm | 22 ++++------------------
1 file changed, 4 insertions(+), 18 deletions(-)

Toggle diff (46 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 862efc0f5b5..c4b37270668 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -24322,19 +24322,13 @@ (define-public python-isort
(sha256
(base32
"1vbwc4gpffclf6hw08lvvgqlvsgfjlw7gjsm28jfcrln2pixla7j"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
+ #:test-flags '(list "tests/unit/" "-k" "not test_gitignore"
+ "--ignore=tests/unit/test_deprecated_finders.py")
#:phases
#~(modify-phases %standard-phases
- (replace 'build
- (lambda _
- (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
- (replace 'install
- (lambda _
- (let ((whl (car (find-files "dist" "\\.whl$"))))
- (invoke "pip" "--no-cache-dir" "--no-input"
- "install" "--no-deps" "--prefix" #$output whl))))
(add-after 'install 'install-example-plugins
(lambda _
(for-each (lambda (source-directory)
@@ -24348,15 +24342,7 @@ (define-public python-isort
(setenv "HOME" (getcwd))
(let ((example-whls (find-files "dist" "^example.*\\.whl$")))
(apply invoke "pip" "--no-cache-dir" "--no-input"
- "install" "--user" "--no-deps" example-whls))))
- (replace 'check
- (lambda* (#:key tests? inputs outputs #:allow-other-keys)
- (when tests?
- (let ((bin (string-append #$output "/bin")))
- (setenv "PATH" (string-append (getenv "PATH") ":" bin)))
- (invoke "pytest" "-vv" "tests/unit/"
- "-k" "not test_gitignore" ;requires git
- "--ignore=tests/unit/test_deprecated_finders.py")))))))
+ "install" "--user" "--no-deps" example-whls)))))))
(native-inputs
(list python-black
python-colorama
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 05/92] gnu: python-codespell: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-5-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-codespell):
[arguments]: Remove uneeded field.

Change-Id: I0d265e9c606730e8208376a7e0970d1c7a7d7a50
---
gnu/packages/python-xyz.scm | 11 -----------
1 file changed, 11 deletions(-)

Toggle diff (24 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c4b37270668..a28e4e72f21 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -20190,17 +20190,6 @@ (define-public python-codespell
python-tomli
python-setuptools
python-wheel))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key outputs tests? #:allow-other-keys)
- (when tests?
- ;; Make installed executable available for running the tests.
- (setenv "PATH"
- (string-append (assoc-ref outputs "out") "/bin"
- ":" (getenv "PATH")))
- (invoke "pytest" "-vv")))))))
(home-page "https://github.com/codespell-project/codespell/")
(synopsis "Spellchecker for code")
(description "Codespell fixes common misspellings in text files.
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 06/92] gnu: python-mutagen: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-6-ngraves@ngraves.fr
* gnu/packages/music.scm (python-mutagen):
[build-system]: Move to pyproject-build-system.

Change-Id: Ic7790e4a17e3f0bdd7347eb668796aa4e0f61b0b
---
gnu/packages/music.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)

Toggle diff (15 lines)
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 798aad11f72..38133cedc9e 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -4010,7 +4010,7 @@ (define-public python-mutagen
(sha256
(base32
"1qdk6i8gyhbi1c4j5jmbfpac3q8sff2ysri1pnp7nb9wzcp615v3"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
#:phases
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 07/92] gnu: python-http-ece: Update to 1.2.0.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-7-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-http-ece): Update to 1.2.0.

Change-Id: I8d82959841b64db48eb01b88914298ba12f1a388
---
gnu/packages/python-web.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)

Toggle diff (24 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 3cebbbbe739..11fa240350c 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -7330,7 +7330,7 @@ (define-public python-js2py
(define-public python-http-ece
(package
(name "python-http-ece")
- (version "1.1.0")
+ (version "1.2.0")
(source
(origin
(method git-fetch)
@@ -7340,7 +7340,7 @@ (define-public python-http-ece
(file-name (git-file-name name version))
(sha256
(base32
- "0bp4cc0xc123i72h80ax3qz3ixfwx3j7pw343kc7i6kdvfi8klx7"))))
+ "11v9cpmx4jc0nk25af96plzjz3mg1ysm1m001nx6jns06hil1gpy"))))
(build-system python-build-system)
(arguments
`(#:phases
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 08/92] gnu: python-zope-i18nmessageid: Update to 5.1.1.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-8-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-zope-i18nmessageid): Update to 5.1.1.

Change-Id: Ia53db09774addf05b0a856fd1f573c5dd5c902aa
---
gnu/packages/python-web.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)

Toggle diff (23 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 11fa240350c..73f26bb9528 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -3124,14 +3124,13 @@ (define-public python-zope-testrunner-bootstrap
(define-public python-zope-i18nmessageid
(package
(name "python-zope-i18nmessageid")
- (version "5.0.1")
+ (version "5.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "zope.i18nmessageid" version))
(sha256
- (base32
- "0ndhn4w1qgwkfbwf9vm2bgq418z5g0wmfsgl0d9nz62cd0mi8d4m"))))
+ (base32 "14mx62khys82p2gmmf3m40x4jmvcz3rndvl6qik2n2qfp13n7ds7"))))
(build-system python-build-system)
(native-inputs
(list python-coverage python-zope-testrunner))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 09/92] gnu: python-aionotify: Update to 0.3.0.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-9-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-aionotify): Update to 0.3.0.
[build-system]: Move to pyproject-build-system.

* gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch : Remove
patch.

* gnu/local.mk: Remove patch.

Change-Id: I9f13d6d71f69dd9877ac42e46b087989f23941e2
---
gnu/local.mk | 1 -
.../python-aionotify-0.2.0-py3.8.patch | 48 -------------------
gnu/packages/python-xyz.scm | 13 +++--
3 files changed, 6 insertions(+), 56 deletions(-)
delete mode 100644 gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch

Toggle diff (102 lines)
diff --git a/gnu/local.mk b/gnu/local.mk
index 1f951d88ab1..9c61039239b 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1920,7 +1920,6 @@ dist_patch_DATA = \
%D%/packages/patches/python-3-search-paths.patch \
%D%/packages/patches/python-3-fix-tests.patch \
%D%/packages/patches/python-3-hurd-configure.patch \
- %D%/packages/patches/python-aionotify-0.2.0-py3.8.patch \
%D%/packages/patches/python-cross-compile.patch \
%D%/packages/patches/python-configobj-setuptools.patch \
%D%/packages/patches/python-dateutil-pytest-compat.patch \
diff --git a/gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch b/gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch
deleted file mode 100644
index ebeef34720a..00000000000
--- a/gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-Compatibility with Python 3.8, see upstream issue
-https://github.com/rbarrois/aionotify/pull/15
-
-diff --git a/setup.py b/setup.py
-index 21a554f..094de64 100755
---- a/setup.py
-+++ b/setup.py
-@@ -40,7 +40,7 @@ setup(
- setup_requires=[
- ],
- tests_require=[
-- 'asynctest',
-+ 'asynctest; python_version<"3.8"',
- ],
- classifiers=[
- "Development Status :: 4 - Beta",
-diff --git a/tests/test_usage.py b/tests/test_usage.py
-index f156291..0476ff1 100644
---- a/tests/test_usage.py
-+++ b/tests/test_usage.py
-@@ -8,7 +8,11 @@ import os.path
- import tempfile
- import unittest
-
--import asynctest
-+try:
-+ testBase = unittest.IsolatedAsyncioTestCase
-+except AttributeError:
-+ import asynctest
-+ testBase = asynctest.TestCase
-
- import aionotify
-
-@@ -25,11 +29,13 @@ if AIODEBUG:
- TESTDIR = os.environ.get('AIOTESTDIR') or os.path.join(os.path.dirname(__file__), 'testevents')
-
-
--class AIONotifyTestCase(asynctest.TestCase):
-+class AIONotifyTestCase(testBase):
- forbid_get_event_loop = True
- timeout = 3
-
- def setUp(self):
-+ if not getattr (self, 'loop', None):
-+ self.loop = asyncio.get_event_loop()
- if AIODEBUG:
- self.loop.set_debug(True)
- self.watcher = aionotify.Watcher()
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a28e4e72f21..e1e8ef7caa0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30515,23 +30515,22 @@ (define-public python-cson
(define-public python-aionotify
(package
(name "python-aionotify")
- (version "0.2.0")
+ (version "0.3.0")
(source
(origin
;; Source tarball on PyPi lacks tests
(method git-fetch)
(uri (git-reference
(url "https://github.com/rbarrois/aionotify")
- (commit (string-append "v" version))))
+ (commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1sk9i8czxgsbrswsf1nlb4c82vgnlzi8zrvrxdip92w2z8hqh43y"))
- (patches (search-patches "python-aionotify-0.2.0-py3.8.patch"))))
- (build-system python-build-system)
+ (base32 "0qkzwccv8k6mx1yvc0hmsgnzgb4vh8h97kq7i64ic6xzxkd57vkz"))))
+ (build-system pyproject-build-system)
(home-page "https://github.com/rbarrois/aionotify")
- (synopsis "Asyncio-powered inotify library")
+ (synopsis "inotify library for Python")
(description
- "@code{aionotify} is a simple, asyncio-based inotify library.")
+ "@code{python-aionotify} is a simple, asyncio-based inotify library.")
(license license:bsd-3)))
(define-public python-forbiddenfruit
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 10/92] gnu: vdirsyncer: Move to pyproject-build-system and enable tests.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-10-ngraves@ngraves.fr
* gnu/packages/dav.scm (vdirsyncer):
[build-system]: Move to pyproject-build-system.
[arguments]<#:tests?>: Remove to enable tests.
<#:test-flags>: Ignore test that require network connection.
<#:phases>: Remove check phase replacement.

Change-Id: Iafccfc65e3a847a0eecc26c179f435b9ec1fdfec
---
gnu/packages/dav.scm | 14 ++++----------
1 file changed, 4 insertions(+), 10 deletions(-)

Toggle diff (45 lines)
diff --git a/gnu/packages/dav.scm b/gnu/packages/dav.scm
index ae034423746..b30b1ef5a59 100644
--- a/gnu/packages/dav.scm
+++ b/gnu/packages/dav.scm
@@ -5,6 +5,7 @@
;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2021 Tanguy Le Carrour <tanguy@bioneland.org>
;;; Copyright © 2022 Jonathan Brielmaier <jonathan.brielmaier@web.de>
+;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -23,6 +24,7 @@
(define-module (gnu packages dav)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix download)
#:use-module (guix gexp)
#:use-module (guix licenses)
@@ -124,20 +126,12 @@ (define-public vdirsyncer
(sha256
(base32
"1fl21m10ghrpmkqa12g0qri99cxk9879pkb60jd4b4w2mgp8q1gx"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
- #:tests? #f ; the test suite is very flakey
+ #:test-flags '(list "-k" "not test_request_ssl")
#:phases
#~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key inputs outputs tests? #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (setenv "DETERMINISTIC_TESTS" "true")
- (setenv "DAV_SERVER" "radicale")
- (setenv "REMOTESTORAGE_SERVER" "skip")
- (if tests?
- (invoke "make" "test"))))
(add-after 'unpack 'patch-version-call
(lambda _
(substitute* "docs/conf.py"
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 11/92] gnu: python-django-localflavor: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-11-ngraves@ngraves.fr
* gnu/packages/django.scm (python-django-localflavor):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Rewrite check phase replacement.
<#:test-flags>: Use it.
[native-inputs]: Remove them. Not needed with the check phase
rewrite.

Change-Id: Ie50baab2cb102585ee25e3264e00eebe370f4cb2
---
gnu/packages/django.scm | 23 ++++++++++-------------
1 file changed, 10 insertions(+), 13 deletions(-)

Toggle diff (37 lines)
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 6a373be3592..21099f0ff0f 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -283,20 +283,17 @@ (define-public python-django-localflavor
(uri (pypi-uri "django-localflavor" version))
(sha256
(base32 "0i1s0ijfd9rv2cp5x174jcyjpwn7fyg7s1wpbvlwm96bpdvs6bxc"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key inputs outputs tests? #:allow-other-keys)
- (when tests?
- (add-installed-pythonpath inputs outputs)
- (setenv "PYTHONPATH"
- (string-append ".:"
- (getenv "GUIX_PYTHONPATH")))
- (invoke "invoke" "test")))))))
- (native-inputs
- (list python-coverage python-invoke python-pytest-django which))
+ (list
+ #:test-flags '(list "--settings=tests.settings" "tests")
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (if tests?
+ (apply invoke "python" "-m" "django" "test" test-flags)
+ (format #t "test suite not run~%")))))))
(propagated-inputs
(list python-django python-stdnum))
(home-page "https://django-localflavor.readthedocs.io/en/latest/")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 12/92] gnu: python-docker-pycreds: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-12-ngraves@ngraves.fr
* gnu/packages/docker.scm (python-docker-pycreds):
[build-system]: Move to pyproject-build-system.
[arguments]<#:test-flags>: Use it.
<#:phases>: Remove uneeded field.
[native-inputs]: Remove python-pytest-cov and python-flake8. Add
python-setuptools, python-wheel.

Change-Id: Idde93a366fa187d2af915ed15801da2cdbaa3792
---
gnu/packages/docker.scm | 18 +++++++-----------
1 file changed, 7 insertions(+), 11 deletions(-)

Toggle diff (54 lines)
diff --git a/gnu/packages/docker.scm b/gnu/packages/docker.scm
index b18de182fe5..de1baa15172 100644
--- a/gnu/packages/docker.scm
+++ b/gnu/packages/docker.scm
@@ -8,6 +8,7 @@
;;; Copyright © 2020 Jesse Dowell <jessedowell@gmail.com>
;;; Copyright © 2021, 2022 Oleg Pykhalov <go.wigust@gmail.com>
;;; Copyright © 2022 Pierre Langlois <pierre.langlois@gmx.com>
+;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -35,6 +36,7 @@ (define-module (gnu packages docker)
#:use-module (guix build-system gnu)
#:use-module (guix build-system go)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix utils)
#:use-module (gnu packages autotools)
#:use-module (gnu packages base)
@@ -47,6 +49,7 @@ (define-module (gnu packages docker)
#:use-module (gnu packages networking)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
@@ -151,19 +154,12 @@ (define-public python-docker-pycreds
(sha256
(base32
"1m44smrggnqghxkqfl7vhapdw89m1p3vdr177r6cq17lr85jgqvc"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'fix-versioning
- (lambda _
- (substitute* "test-requirements.txt"
- (("3.0.2") ,(package-version python-pytest))
- (("2.3.1") ,(package-version python-pytest-cov))
- (("2.4.1") ,(package-version python-flake8)))
- #t)))))
+ (list ; XXX: These tests require docker credentials to run.
+ #:test-flags '(list "--ignore=tests/store_test.py")))
(native-inputs
- (list python-flake8 python-pytest python-pytest-cov))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-six))
(home-page "https://github.com/shin-/dockerpy-creds")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 13/92] gnu: Add xcffibgen.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-13-ngraves@ngraves.fr
* gnu/packages/xorg.scm (xcffibgen): New variable.

Change-Id: Ibcbacdfdeaa657ec1ded7dcc09c10c7fc2aa6717
---
gnu/packages/xorg.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)

Toggle diff (46 lines)
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 74059a26910..fbe6375818f 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -1673,6 +1673,39 @@ (define-public printproto
network-transparent printing system.")
(license license:x11)))
+(define xcffibgen
+ (package
+ (name "xcffibgen")
+ (version "1.4.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/tych0/xcffib")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0wz6zlaqsmpw7ahaadpd7m5n5c5b2ya30xwsana4j5ljygdvzqp9"))))
+ (build-system haskell-build-system)
+ (native-inputs
+ (list ghc-hunit ghc-test-framework ghc-test-framework-hunit))
+ (inputs
+ (list libxcb
+ ghc
+ ghc-filemanip
+ ghc-split
+ ghc-language-python
+ ghc-attoparsec
+ ghc-either
+ ghc-optparse-applicative
+ ghc-xcb-types))
+ (home-page "https://github.com/tych0/xcffib")
+ (synopsis "Build tool for python-xcbffib bindings")
+ (description
+ "This is an internal package that provides a build tool to
+generate code for the @code{python-xcbffib} package.")
+ (license license:expat)))
+
(define-public randrproto
(package
(name "randrproto")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 14/92] gnu: Add ghc-language-python.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-14-ngraves@ngraves.fr
* gnu/packages/haskell-xyz.scm (ghc-language-python): New variable.

Change-Id: I29bcdedf155486673e01b3b6af71a2aa81455ef6
---
gnu/packages/haskell-xyz.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)

Toggle diff (38 lines)
diff --git a/gnu/packages/haskell-xyz.scm b/gnu/packages/haskell-xyz.scm
index b5943f2f476..23af2a03bde 100644
--- a/gnu/packages/haskell-xyz.scm
+++ b/gnu/packages/haskell-xyz.scm
@@ -6397,6 +6397,31 @@ (define-public ghc-language-haskell-extract
with @code{wc} (for a web service).")
(license license:bsd-3)))
+(define-public ghc-language-python
+ (package
+ (name "ghc-language-python")
+ (version "0.5.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (hackage-uri "language-python" version))
+ (sha256
+ (base32 "1mf3czvnh9582klv0c9g7pcn1wx4qjwpvhv8la6afaifv6y5lki2"))))
+ (build-system haskell-build-system)
+ (arguments
+ `(#:cabal-revision ("2"
+ "024fn653gmxw4ndmqvg1d3lwmxbvrlllc9iw2zw0c3nkcgcv39sg")))
+ (native-inputs (list ghc-alex ghc-happy))
+ (inputs (list ghc-monads-tf ghc-utf8-string))
+ (home-page "http://github.com/bjpop/language-python")
+ (synopsis "Parse and pretty print Python code in Haskell")
+ (description
+ "@code{language-python} is a Haskell library for lexical analysis,
+parsing and pretty printing Python code. It supports versions 2.x and 3.x of
+Python.")
+ (license license:bsd-3)
+ (properties '((upstream-name . "language-python")))))
+
(define-public ghc-lens
(package
(name "ghc-lens")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 15/92] gnu: python-xcffib: Move to (gnu packages xorg).
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-15-ngraves@ngraves.fr
* /gnu/packages/python-xyz.scm (python-xcffib): Move from here…
* gnu/packages/xorg.scm (python-xcffib): …to here.

The package's build is fully rewritten and updated to version 1.5.0.

Change-Id: Ia77b9fc2160dacd77c3eaf4199278046a52515d7
---
gnu/packages/python-xyz.scm | 44 -------------------------------------
gnu/packages/xorg.scm | 41 ++++++++++++++++++++++++++++++++++
2 files changed, 41 insertions(+), 44 deletions(-)

Toggle diff (123 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index e1e8ef7caa0..b34af56a1db 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11139,50 +11139,6 @@ (define-public python-manimpango
ManimPango is internally used in Manim to render (non-LaTeX) text.")
(license license:expat)))
-(define-public python-xcffib
- (package
- (name "python-xcffib")
- (version "0.11.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "xcffib" version))
- (sha256
- (base32
- "0nkglsm9nbhv238iagmmsjcz6lf1yfdvp5kmspphdj385vz9r50j"))))
- (build-system python-build-system)
- (inputs
- (list libxcb))
- (propagated-inputs
- (list python-cffi ; used at run time
- python-six))
- (arguments
- `(;; FIXME: Tests need more work. See ".travis.yml" in the repository.
- #:tests? #f
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'fix-libxcb-path
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((libxcb (assoc-ref inputs "libxcb")))
- (substitute* '("xcffib/__init__.py")
- (("soname = ctypes.util.find_library.*xcb.*")
- (string-append "soname = \"" libxcb "/lib/libxcb.so\"\n")))
- #t)))
- (add-after 'install 'install-doc
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((doc (string-append (assoc-ref outputs "out") "/share"
- "/doc/" ,name "-" ,version)))
- (mkdir-p doc)
- (copy-file "README.md"
- (string-append doc "/README.md"))
- #t))))))
- (home-page "https://github.com/tych0/xcffib")
- (synopsis "XCB Python bindings")
- (description
- "Xcffib is a replacement for xpyb, an XCB Python bindings. It adds
-support for Python 3 and PyPy. It is based on cffi.")
- (license license:expat)))
-
(define-public python-cairocffi
(package
(name "python-cairocffi")
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index fbe6375818f..2bc6946599c 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -65,6 +65,7 @@ (define-module (gnu packages xorg)
#:use-module (guix build-system meson)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix utils)
#:use-module (gnu packages)
#:use-module (gnu packages aidc)
@@ -92,6 +93,7 @@ (define-module (gnu packages xorg)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages libedit)
+ #:use-module (gnu packages libffi)
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
#:use-module (gnu packages m4)
@@ -1706,6 +1708,45 @@ (define xcffibgen
generate code for the @code{python-xcbffib} package.")
(license license:expat)))
+(define-public python-xcffib
+ (package
+ (name "python-xcffib")
+ (version "1.5.0")
+ (source (package-source xcffibgen))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list pkg-config which xcb-proto xcffibgen))
+ (inputs
+ (list libxcb))
+ (propagated-inputs
+ (list python-cffi ; used at run time
+ python-six))
+ (arguments
+ (list
+ ;; Tests seem to require version 3.12 of Python.
+ #:tests? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'generate-bindings
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "Makefile"
+ (("^GEN=.*")
+ (format #f "GEN=~a~%"
+ (search-input-file inputs "/bin/xcffibgen"))))
+ (invoke "make" "xcffib")))
+ (add-before 'build 'fix-libxcb-path
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "xcffib/__init__.py"
+ (("ctypes\\.util\\.find_library\\(\"xcb\"\\)")
+ (format #f "~s"
+ (search-input-file inputs "/lib/libxcb.so.1")))))))))
+ (home-page "https://github.com/tych0/xcffib")
+ (synopsis "XCB Python bindings")
+ (description
+ "Xcffib is a replacement for xpyb, an XCB Python bindings. It adds
+support for Python 3 and PyPy. It is based on cffi.")
+ (license license:expat)))
+
(define-public randrproto
(package
(name "randrproto")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 16/92] gnu: qtile: Update to 0.23.0.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-16-ngraves@ngraves.fr
* gnu/packages/wm.scm (qtile): Update to 0.23.0.
[build-system]: Upgrade to pyproject-build-system.
[arguments]<#:phases>: Use gexp (but do not indent). Add phase
pre-check.
<#:test-flags>: Use it.
[native-inputs]: Add python-pytest and
xorg-server-for-tests. Reorder.

Change-Id: Id6f291c0d23fa2cef17d6e45552f45c56f162741
---
gnu/packages/wm.scm | 35 ++++++++++++++++++++++++-----------
1 file changed, 24 insertions(+), 11 deletions(-)

Toggle diff (83 lines)
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index f2cb77f5bfd..3ae4d03839b 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -63,7 +63,7 @@
;;; Copyright © 2023 Gabriel Wicki <gabriel@erlikon.ch>
;;; Copyright © 2023 Jonathan Brielamier <jonathan.brielmaier@web.de>
;;; Copyright © 2023 Vessel Wave <vesselwave@disroot.org>
-;;; Copyright © 2023 Nicolas Graves <ngraves@ngraves.fr>
+;;; Copyright © 2023, 2024 Nicolas Graves <ngraves@ngraves.fr>
;;; Copyright © 2023, 2024 Jaeme Sifat <jaeme@runbox.com>
;;; Copyright © 2023 Josselin Poiret <dev@jpoiret.xyz>
;;; Copyright © 2024 Timotej Lazar <timotej.lazar@araneo.si>
@@ -101,6 +101,7 @@ (define-module (gnu packages wm)
#:use-module (guix build-system haskell)
#:use-module (guix build-system meson)
#:use-module (guix build-system perl)
+ #:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
#:use-module (guix build-system trivial)
#:use-module (guix utils)
@@ -594,19 +595,22 @@ (define-public python-i3-py
(define-public qtile
(package
(name "qtile")
- (version "0.18.1")
+ (version "0.23.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "qtile" version))
(sha256
- (base32 "14hb26xkza7brvkd4276j60mxd3zsas72ih6y0cq3j060izm1865"))))
- (build-system python-build-system)
+ (base32 "1v8rxm2xg2igxv6gwa78wrkxzgfxmxfgflbjdp4fm7cxjdx3zrpa"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:tests? #f ; Tests require Xvfb and writable temp/cache space
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-paths
+ (list
+ ;; A lot of tests fail despite Xvfb and writable temp/cache space.
+ #:tests? #f
+ #:test-flags '("--ignore=test/widgets/test_widget_init_configure.py")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-paths
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "libqtile/pangocffi.py"
(("^gobject = ffi.dlopen.*")
@@ -626,7 +630,14 @@ (define-public qtile
(mkdir-p xsessions)
(copy-file "resources/qtile.desktop" (string-append xsessions "/qtile.desktop"))
(substitute* (string-append xsessions "/qtile.desktop")
- (("qtile start") qtile))))))))
+ (("qtile start") qtile)))))
+ (add-before 'check 'pre-check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (setenv "HOME" "/tmp")
+ (system "Xvfb :1 &")
+ (setenv "DISPLAY" ":1")
+ (setenv "XDG_CACHE_HOME" "/tmp")))))))
(inputs
(list glib pango pulseaudio))
(propagated-inputs
@@ -643,9 +654,11 @@ (define-public qtile
(list pkg-config
python-flake8
python-pep8-naming
- python-psutil
+ python-pytest
python-pytest-cov
- python-setuptools-scm))
+ python-psutil
+ python-setuptools-scm
+ xorg-server-for-tests))
(home-page "http://qtile.org")
(synopsis "Hackable tiling window manager written and configured in Python")
(description "Qtile is simple, small, and extensible. It's easy to write
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 17/92] gnu: qtile: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-17-ngraves@ngraves.fr
* gnu/packages/wm.scm (qtile): Indent as needed. Light rewrite using
format instead of string-append in [arguments]<#:phases>. Ensure
lines wrap with intended length.

Change-Id: I297718138642d24604743137f3181bfc76a51b54
---
gnu/packages/wm.scm | 72 +++++++++++++++++++++++----------------------
1 file changed, 37 insertions(+), 35 deletions(-)

Toggle diff (100 lines)
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 3ae4d03839b..a1c94fe13a9 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -597,11 +597,11 @@ (define-public qtile
(name "qtile")
(version "0.23.0")
(source
- (origin
- (method url-fetch)
- (uri (pypi-uri "qtile" version))
- (sha256
- (base32 "1v8rxm2xg2igxv6gwa78wrkxzgfxmxfgflbjdp4fm7cxjdx3zrpa"))))
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "qtile" version))
+ (sha256
+ (base32 "1v8rxm2xg2igxv6gwa78wrkxzgfxmxfgflbjdp4fm7cxjdx3zrpa"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -611,26 +611,28 @@ (define-public qtile
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-paths
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "libqtile/pangocffi.py"
- (("^gobject = ffi.dlopen.*")
- (string-append "gobject = ffi.dlopen(\""
- (assoc-ref inputs "glib") "/lib/libgobject-2.0.so.0\")\n"))
- (("^pango = ffi.dlopen.*")
- (string-append "pango = ffi.dlopen(\""
- (assoc-ref inputs "pango") "/lib/libpango-1.0.so.0\")\n"))
- (("^pangocairo = ffi.dlopen.*")
- (string-append "pangocairo = ffi.dlopen(\""
- (assoc-ref inputs "pango") "/lib/libpangocairo-1.0.so.0\")\n")))))
- (add-after 'install 'install-xsession
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (xsessions (string-append out "/share/xsessions"))
- (qtile (string-append out "/bin/qtile start")))
- (mkdir-p xsessions)
- (copy-file "resources/qtile.desktop" (string-append xsessions "/qtile.desktop"))
- (substitute* (string-append xsessions "/qtile.desktop")
- (("qtile start") qtile)))))
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "libqtile/pangocffi.py"
+ (("^(gobject = ffi.dlopen).*" all def)
+ (format #f "~a(~s)~%" def
+ (search-input-file inputs "/lib/libgobject-2.0.so.0")))
+ (("^(pango = ffi.dlopen).*" all def)
+ (format #f "~a(~s)~%" def
+ (search-input-file inputs "/lib/libpango-1.0.so.0")))
+ (("^(pangocairo = ffi.dlopen).*" all def)
+ (format #f "~a(~s)~%" def
+ (search-input-file
+ inputs "/lib/libpangocairo-1.0.so.0"))))))
+ (add-after 'install 'install-xsessions
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (xsessions (string-append out "/share/xsessions"))
+ (qtile (string-append out "/bin/qtile start")))
+ (mkdir-p xsessions)
+ (copy-file "resources/qtile.desktop"
+ (string-append xsessions "/qtile.desktop"))
+ (substitute* (string-append xsessions "/qtile.desktop")
+ (("qtile start") qtile)))))
(add-before 'check 'pre-check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
@@ -639,17 +641,17 @@ (define-public qtile
(setenv "DISPLAY" ":1")
(setenv "XDG_CACHE_HOME" "/tmp")))))))
(inputs
- (list glib pango pulseaudio))
+ (list glib pango pulseaudio))
(propagated-inputs
- (list python-cairocffi
- python-cffi
- python-dateutil
- python-dbus-next
- python-iwlib
- python-keyring
- python-mpd2
- python-pyxdg
- python-xcffib))
+ (list python-cairocffi
+ python-cffi
+ python-dateutil
+ python-dbus-next
+ python-iwlib
+ python-keyring
+ python-mpd2
+ python-pyxdg
+ python-xcffib))
(native-inputs
(list pkg-config
python-flake8
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 18/92] gnu: sshuttle: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-18-ngraves@ngraves.fr
* gnu/packages/vpn.scm (sshuttle):
[build-system]: Use pyproject-build-system.
[arguments]: Delete field.

Change-Id: I4fd3cb99b281c22200b059586080e29851a8a74c
---
gnu/packages/vpn.scm | 12 +-----------
1 file changed, 1 insertion(+), 11 deletions(-)

Toggle diff (25 lines)
diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 7823ef19eb0..9da51cb5617 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -966,17 +966,7 @@ (define-public sshuttle
(sha256
(base32
"0vp13xwrhx4m6zgsyzvai84lkq9mzkaw47j58dk0ll95kaymk2x8"))))
- (build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-FHS-file-names
- (lambda _
- (substitute* "sshuttle/client.py"
- (("/usr/bin/env") (which "env")))
- (substitute* "sshuttle/ssh.py"
- (("/bin/sh") "sh"))
- #t)))))
+ (build-system pyproject-build-system)
(native-inputs
(list python-setuptools-scm
;; For tests only.
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 19/92] gnu: python-apiron: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-19-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-apiron):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Replace field with <#:test-flags>.

Change-Id: I04bb9739b6356fd50fc07ae54838764d51ed22d6
---
gnu/packages/python-web.scm | 11 ++---------
1 file changed, 2 insertions(+), 9 deletions(-)

Toggle diff (25 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 73f26bb9528..fd9d49e2e2f 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -3554,16 +3554,9 @@ (define-public python-apiron
(uri (pypi-uri "apiron" version))
(sha256
(base32 "1qwbqn47sf0aqznj1snbv37v8ijx476qqkjf5l9pac7xjkxsr8qk"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest" "-vv" "--cov" "-k"
- ;; This test tries to connect to the internet.
- "not test_call"))))))
+ (list #:test-flags '(list "-k" "not test_call")))
(propagated-inputs
(list python-requests))
(native-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 20/92] gnu: python-alembic: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-20-ngraves@ngraves.fr
* gnu/packages/databases.scm (python-alembic):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove field, now uneeded.

Change-Id: I5907ff84412d867d094aae5fb4daa8481eb7f30c
---
gnu/packages/databases.scm | 7 +------
1 file changed, 1 insertion(+), 6 deletions(-)

Toggle diff (20 lines)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index b519bc4fb5d..a3a550c40c3 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3762,12 +3762,7 @@ (define-public python-alembic
(uri (pypi-uri "alembic" version))
(sha256
(base32 "0lxi2g2025lz5k7k5dd5fc1lfijqi2yw6qqyjzp073z6laa8cckw"))))
- (build-system python-build-system)
- (arguments
- '(#:phases (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (invoke "pytest" "-vv"))))))
+ (build-system pyproject-build-system)
(native-inputs
(list python-mock python-pytest-cov))
(propagated-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 21/92] gnu: conda: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-21-ngraves@ngraves.fr
* gnu/packages/package-management.scm (conda): Improve package style.
[build-system]: Move to pyproject-build-system.
[arguments]<#:test-flags>: Use field instead of check phase
replacement.
<#:phases>: Remove check phase replacement. Improve use of format in
phase do-not-use-python-root-as-prefix. Use gexp. Put phase init
after phase create-entrypoints.

Change-Id: Id1affbf8f80fae2882e4c8a88b1e817cf49a5c00
---
gnu/packages/package-management.scm | 104 +++++++++++++---------------
1 file changed, 50 insertions(+), 54 deletions(-)

Toggle diff (146 lines)
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index f4c2cf91492..8a47135ad02 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1170,10 +1170,49 @@ (define-public conda
(sha256
(base32
"16vz4vx311ry9w35mi5wna8p8n3abd6wdqrpqzjfdlwv7hcr44s4"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
+ (list
+ #:test-flags
+ '(list
+ "--ignore=tests/cli/test_main_clean.py"
+ "--ignore=tests/cli/test_main_rename.py"
+ "-k" (string-append
+ "not "
+ (string-join
+ (list
+ "integration"
+ ;; This one reports a newer version of conda than
+ ;; expected; conda-1.5.2-py27_0 instead of
+ ;; conda-1.3.5-py27_0.
+ "test_auto_update_conda"
+ ;; This fails because the output directory is not a
+ ;; Conda environment.
+ "test_list"
+ ;; This fails because we patched the default root
+ ;; prefix.
+ "test_default_target_is_root_prefix"
+ ;; This fails because of missing features in python-flaky.
+ "test_no_features"
+ ;; These fail because they require network access
+ "test_no_ssl"
+ "test_run_readonly_env"
+ "test_run_returns_int"
+ "test_run_returns_nonzero_errorlevel"
+ "test_run_returns_zero_errorlevel"
+ "test_run_uncaptured"
+
+ ;; TODO: I don't understand what this failure means
+ "test_PrefixData_return_value_contract"
+ ;; TODO: same here
+ "test_install_1"
+ ;; Not sure if this is really wrong. This fails because
+ ;; /gnu/store/...conda-22.9.0/bin/python
+ ;; is not /gnu/store/...python-wrapper-3.9.9/bin/python
+ "test_make_entry_point")
+ " and not ")))
+ #:phases
+ #~(modify-phases %standard-phases
;; The default version of pytest does not support these options.
(add-after 'unpack 'use-older-pytest
(lambda _
@@ -1186,10 +1225,6 @@ (define-public conda
(add-after 'unpack 'correct-python-executable-name
(lambda* (#:key inputs #:allow-other-keys)
(let ((python (assoc-ref inputs "python-wrapper")))
- #;
- (substitute* "conda/common/path.py"
- (("python_version or ''")
- "python_version or '3'"))
(substitute* "conda/core/initialize.py"
(("python_exe = join")
(format #f "python_exe = \"~a/bin/python\" #"
@@ -1200,19 +1235,19 @@ (define-public conda
(python (assoc-ref inputs "python-wrapper")))
(substitute* "tests/core/test_initialize.py"
(("\"\"\"\\) % conda_prefix")
- (format #f "\"\"\") % \"~a\"" python))
+ (format #f "\"\"\") % ~s" python))
(("CONDA_PYTHON_EXE \"%s\"' % join\\(conda_prefix")
- (format #f "CONDA_PYTHON_EXE \"%s\"' % join(\"~a\""
+ (format #f "CONDA_PYTHON_EXE \"%s\"' % join(~s"
python))
(("conda_prefix = abspath\\(sys.prefix\\)")
- (format #f "conda_prefix = abspath(\"~a\")" out)))
+ (format #f "conda_prefix = abspath(~s)" out)))
(substitute* "conda/base/context.py"
(("os.chdir\\(sys.prefix\\)")
- (format #f "os.chdir(\"~a\")" out))
+ (format #f "os.chdir(~s)" out))
(("sys.prefix, '.condarc'")
- (format #f "\"~a\", '.condarc'" out))
+ (format #f "~s, '.condarc'" out))
(("return abspath\\(sys.prefix\\)")
- (format #f "return abspath(\"~a\")" out))
+ (format #f "return abspath(~s)" out))
(("os.path.join\\(sys.prefix, bin_dir, exe\\)")
(format #f "\"~a/bin/conda\"" out))
(("'CONDA_EXE', sys.executable")
@@ -1220,47 +1255,8 @@ (define-public conda
(add-before 'build 'create-version-file
(lambda _
(with-output-to-file "conda/.version"
- (lambda () (display ,version)))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- ;; These tests all require network access.
- (for-each delete-file '("tests/cli/test_main_clean.py"
- "tests/cli/test_main_rename.py"))
- (when tests?
- (setenv "HOME" "/tmp")
- (invoke "py.test" "-vv"
- "-k"
- (string-append
- "not integration"
- ;; This one reports a newer version of conda than
- ;; expected; conda-1.5.2-py27_0 instead of
- ;; conda-1.3.5-py27_0.
- " and not test_auto_update_conda"
- ;; This fails because the output directory is not a
- ;; Conda environment.
- " and not test_list"
- ;; This fails because we patched the default root
- ;; prefix.
- " and not test_default_target_is_root_prefix"
- ;; This fails because of missing features in python-flaky.
- " and not test_no_features"
- ;; These fail because they require network access
- " and not test_no_ssl"
- " and not test_run_readonly_env"
- " and not test_run_returns_int"
- " and not test_run_returns_nonzero_errorlevel"
- " and not test_run_returns_zero_errorlevel"
- " and not test_run_uncaptured"
-
- ;; TODO: I don't understand what this failure means
- " and not test_PrefixData_return_value_contract"
- ;; TODO: same here
- " and not test_install_1"
- ;; Not sure if this is really wrong. This fails because
- ;; /gnu/store/...conda-22.9.0/bin/python
- ;; is not /gnu/store/...python-wrapper-3.9.9/bin/python
- " and not test_make_entry_point")))))
- (add-after 'install 'init
+ (lambda () (display #$version)))))
+ (add-after 'create-entrypoints 'init
;; This writes a whole bunch of shell initialization files to the
;; prefix directory. Many features of conda can only be used after
;; running "conda init".
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 22/92] gnu: conda: Reindent.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-22-ngraves@ngraves.fr
* gnu/packages/package-management.scm (conda): Reindent.

Change-Id: I954ec137b4dc39cd561da9ed0e583991bb3de1db
---
gnu/packages/package-management.scm | 112 ++++++++++++++--------------
1 file changed, 56 insertions(+), 56 deletions(-)

Toggle diff (132 lines)
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 8a47135ad02..a01c9faab13 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1164,8 +1164,8 @@ (define-public conda
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/conda/conda")
- (commit version)))
+ (url "https://github.com/conda/conda")
+ (commit version)))
(file-name (git-file-name name version))
(sha256
(base32
@@ -1212,60 +1212,60 @@ (define-public conda
"test_make_entry_point")
" and not ")))
#:phases
- #~(modify-phases %standard-phases
- ;; The default version of pytest does not support these options.
- (add-after 'unpack 'use-older-pytest
- (lambda _
- (substitute* "setup.cfg"
- (("--xdoctest-.*") ""))))
- (add-after 'unpack 'fix-ruamel-yaml-dependency
- (lambda _
- (substitute* "setup.py"
- (("ruamel_yaml_conda") "ruamel.yaml"))))
- (add-after 'unpack 'correct-python-executable-name
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((python (assoc-ref inputs "python-wrapper")))
- (substitute* "conda/core/initialize.py"
- (("python_exe = join")
- (format #f "python_exe = \"~a/bin/python\" #"
- python))))))
- (add-after 'unpack 'do-not-use-python-root-as-prefix
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out"))
- (python (assoc-ref inputs "python-wrapper")))
- (substitute* "tests/core/test_initialize.py"
- (("\"\"\"\\) % conda_prefix")
- (format #f "\"\"\") % ~s" python))
- (("CONDA_PYTHON_EXE \"%s\"' % join\\(conda_prefix")
- (format #f "CONDA_PYTHON_EXE \"%s\"' % join(~s"
- python))
- (("conda_prefix = abspath\\(sys.prefix\\)")
- (format #f "conda_prefix = abspath(~s)" out)))
- (substitute* "conda/base/context.py"
- (("os.chdir\\(sys.prefix\\)")
- (format #f "os.chdir(~s)" out))
- (("sys.prefix, '.condarc'")
- (format #f "~s, '.condarc'" out))
- (("return abspath\\(sys.prefix\\)")
- (format #f "return abspath(~s)" out))
- (("os.path.join\\(sys.prefix, bin_dir, exe\\)")
- (format #f "\"~a/bin/conda\"" out))
- (("'CONDA_EXE', sys.executable")
- (format #f "'CONDA_EXE', \"~a/bin/conda\"" out))))))
- (add-before 'build 'create-version-file
- (lambda _
- (with-output-to-file "conda/.version"
- (lambda () (display #$version)))))
- (add-after 'create-entrypoints 'init
- ;; This writes a whole bunch of shell initialization files to the
- ;; prefix directory. Many features of conda can only be used after
- ;; running "conda init".
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (setenv "HOME" "/tmp")
- (invoke (string-append (assoc-ref outputs "out")
- "/bin/conda")
- "init"))))))
+ #~(modify-phases %standard-phases
+ ;; The default version of pytest does not support these options.
+ (add-after 'unpack 'use-older-pytest
+ (lambda _
+ (substitute* "setup.cfg"
+ (("--xdoctest-.*") ""))))
+ (add-after 'unpack 'fix-ruamel-yaml-dependency
+ (lambda _
+ (substitute* "setup.py"
+ (("ruamel_yaml_conda") "ruamel.yaml"))))
+ (add-after 'unpack 'correct-python-executable-name
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((python (assoc-ref inputs "python-wrapper")))
+ (substitute* "conda/core/initialize.py"
+ (("python_exe = join")
+ (format #f "python_exe = \"~a/bin/python\" #"
+ python))))))
+ (add-after 'unpack 'do-not-use-python-root-as-prefix
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (python (assoc-ref inputs "python-wrapper")))
+ (substitute* "tests/core/test_initialize.py"
+ (("\"\"\"\\) % conda_prefix")
+ (format #f "\"\"\") % ~s" python))
+ (("CONDA_PYTHON_EXE \"%s\"' % join\\(conda_prefix")
+ (format #f "CONDA_PYTHON_EXE \"%s\"' % join(~s"
+ python))
+ (("conda_prefix = abspath\\(sys.prefix\\)")
+ (format #f "conda_prefix = abspath(~s)" out)))
+ (substitute* "conda/base/context.py"
+ (("os.chdir\\(sys.prefix\\)")
+ (format #f "os.chdir(~s)" out))
+ (("sys.prefix, '.condarc'")
+ (format #f "~s, '.condarc'" out))
+ (("return abspath\\(sys.prefix\\)")
+ (format #f "return abspath(~s)" out))
+ (("os.path.join\\(sys.prefix, bin_dir, exe\\)")
+ (format #f "\"~a/bin/conda\"" out))
+ (("'CONDA_EXE', sys.executable")
+ (format #f "'CONDA_EXE', \"~a/bin/conda\"" out))))))
+ (add-before 'build 'create-version-file
+ (lambda _
+ (with-output-to-file "conda/.version"
+ (lambda () (display #$version)))))
+ (add-after 'create-entrypoints 'init
+ ;; This writes a whole bunch of shell initialization files to the
+ ;; prefix directory. Many features of conda can only be used after
+ ;; running "conda init".
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (add-installed-pythonpath inputs outputs)
+ (setenv "HOME" "/tmp")
+ (invoke (string-append (assoc-ref outputs "out")
+ "/bin/conda")
+ "init"))))))
(inputs
(list python-wrapper))
(propagated-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 23/92] gnu: python-conda-package-handling: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-23-ngraves@ngraves.fr
* gnu/packages/package-management.scm (python-conda-package-handling):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Remove check phase replacement.

Change-Id: Ib8edf966b877c6fd5f7ee6151839d4272d65b17d
---
gnu/packages/package-management.scm | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)

Toggle diff (27 lines)
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index a01c9faab13..949c42e274b 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1130,18 +1130,14 @@ (define-public python-conda-package-handling
(sha256
(base32
"1dq6f5ks3cinb355x712bls9bvv6bli6x3c43sdkqvawdw8xgv9j"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-unmodified-libarchive
(lambda _
(substitute* "setup.py"
- (("archive_and_deps") "archive"))))
- (replace 'check
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest" "-vv" "tests"))))))
+ (("archive_and_deps") "archive")))))))
(propagated-inputs
(list python-six python-tqdm))
(inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 24/92] gnu: python-scikit-rf: Fix tests.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-24-ngraves@ngraves.fr
* gnu/packages/engineering.scm (python-scikit-rf): Fix tests.
[arguments]: Set <#:test-flags> to ignore failing tests.

Change-Id: I404b221dc9c1f15e045226196cc43d86b8796b6a
---
gnu/packages/engineering.scm | 6 ++++++
1 file changed, 6 insertions(+)

Toggle diff (19 lines)
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 13e1b595814..f082f346278 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2663,6 +2663,12 @@ (define-public python-scikit-rf
"1cidv2373lwxy26kbzg4slaqvn2gpq67mvijgp0rydfx6mm6a89i"))
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags '(list ;; Missing docscrape dependency.
+ "--ignore=doc/sphinxext/tests/test_docscrape.py"
+ ;; these test require network
+ "--ignore=skrf/tests/test_network.py")))
(propagated-inputs (list python-matplotlib
python-networkx
python-numpy
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 25/92] gnu: gunicorn: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-25-ngraves@ngraves.fr
* gnu/packages/python-web.scm (gunicorn): Improve package style.
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Remove check phase replacement, now in
<#:test-flags>. Use gexp. Remove wrap phase replacement (will not be
needed after merge of 25235).

Change-Id: I83e09cd0a22c0a5d249e50af199c5c648e53aa65
---
gnu/packages/python-web.scm | 41 ++++++++++---------------------------
1 file changed, 11 insertions(+), 30 deletions(-)

Toggle diff (70 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index fd9d49e2e2f..494b11422f3 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -6064,29 +6064,25 @@ (define-public gunicorn
(base32
"1s7670qw36x90bgmazmgib170i5gnpyb2ypxzlla7y0mpasniag0"))))
(outputs '("out" "doc"))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
+ (list
+ #:test-flags '(list
+ ;; Disable the geventlet tests because eventlet uses
+ ;; dnspython, which does not work in the build
+ ;; container due to lack of /etc/resolv.conf, etc.
+ "--ignore=tests/workers/test_geventlet.py")
+ #:phases
+ #~(modify-phases %standard-phases
(add-after 'build 'build-doc
(lambda _
(invoke "make" "-C" "docs" "PAPER=a4" "html" "info")
(delete-file "docs/build/texinfo/Makefile")
(delete-file "docs/build/texinfo/Gunicorn.texi")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (begin
- (invoke "pytest" "-vv"
- ;; Disable the geventlet tests because eventlet uses
- ;; dnspython, which does not work in the build
- ;; container due to lack of /etc/resolv.conf, etc.
- "--ignore=tests/workers/test_geventlet.py"))
- (format #t "test suite not run~%"))))
(add-after 'install 'install-doc
(lambda* (#:key outputs #:allow-other-keys)
(let* ((doc (string-append (assoc-ref outputs "doc")
- "/share/doc/" ,name "-" ,version))
+ "/share/doc/" #$name "-" #$version))
(html (string-append doc "/html"))
(info (string-append doc "/info"))
(examples (string-append doc "/examples")))
@@ -6098,22 +6094,7 @@ (define-public gunicorn
(copy-recursively "examples" examples)
(for-each (lambda (file)
(copy-file file (string-append doc "/" file)))
- '("README.rst" "NOTICE" "LICENSE" "THANKS")))))
- ;; XXX: The wrap phase includes native inputs on PYTHONPATH, (see
- ;; <https://bugs.gnu.org/25235>), leading to an inflated closure
- ;; size. Override it to only add the essential entries.
- (replace 'wrap
- (lambda* (#:key native-inputs inputs outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (python (assoc-ref (or native-inputs inputs) "python"))
- (sitedir (string-append "/lib/python"
- (python-version python)
- "/site-packages")))
- (wrap-program (string-append out "/bin/gunicorn")
- `("PYTHONPATH" ":" prefix
- ,(map (lambda (output)
- (string-append output sitedir))
- (list python out))))))))))
+ '("README.rst" "NOTICE" "LICENSE" "THANKS"))))))))
(native-inputs
(list binutils ;; for ctypes.util.find_library()
python-aiohttp
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 26/92] gnu: python-arrow: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-26-ngraves@ngraves.fr
* gnu/packages/time.scm (python-arrow): Improve package style.
[build-system]: Move to pyproject-build-system.
[arguments]: Moving check replacement phase from <#:phases> to
equivalent <#:test-flags>.

Change-Id: I7e3d356610d624855c3898ccdbfb308ce9f6e627
---
gnu/packages/time.scm | 16 ++++++----------
1 file changed, 6 insertions(+), 10 deletions(-)

Toggle diff (30 lines)
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index 5e20f05fb6c..96fe9f561a0 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -507,17 +507,13 @@ (define-public python-arrow
(sha256
(base32
"189knrgxb3x21lzvqac6qlpd32308hcmpccxdlvr5wmrl46b6d1r"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv" "tests"
- ;; python-dateutil doesn't recognize America/Nuuk.
- ;; Remove when python-dateutil > 2.8.1.
- "-k" "not test_parse_tz_name_zzz")))))))
+ (list
+ #:test-flags '(list "tests"
+ ;; python-dateutil doesn't recognize America/Nuuk.
+ ;; Remove when python-dateutil > 2.8.1.
+ "-k" "not test_parse_tz_name_zzz")))
(native-inputs
(list ;; For testing
python-chai
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 27/92] gnu: dynaconf: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-27-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (dynaconf): Improve package-style and
ignore coverage tests.
[origin](snippet): More concise snippet. Remove coverage management.
[arguments]<#:test-flags>: Add arguments from former check
replacement phase.
<#:phases>: Remove check replacement phase.

Change-Id: I2a0e0a8dea5000aecc05707c35d307c867c96709
---
gnu/packages/python-xyz.scm | 42 +++++++++++++------------------------
1 file changed, 14 insertions(+), 28 deletions(-)

Toggle diff (64 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b34af56a1db..0863ce8fa01 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -34900,43 +34900,29 @@ (define-public dynaconf
"0fj2ffvzfvjf4d7f672h5x5fzq26f8hax9j3dfsix158fwm0212w"))
(patches (search-patches "dynaconf-unvendor-deps.patch"))
(modules '((guix build utils)))
- (snippet '(begin
- ;; Remove vendored dependencies
- (let ((unvendor '("click" "dotenv" "ruamel" "toml")))
- (with-directory-excursion "dynaconf/vendor"
- (for-each delete-file-recursively unvendor)))
- ;; Lower coverage quality gate for unit tests
- (substitute* ".coveragerc"
- (("fail_under = 95") "fail_under = 50"))))))
+ ;; Remove vendored dependencies
+ (snippet '(let ((unvendor '("click" "dotenv" "ruamel" "toml")))
+ (with-directory-excursion "dynaconf/vendor"
+ (for-each delete-file-recursively unvendor))))))
(build-system pyproject-build-system)
(arguments
`(#:test-flags
- '("-k"
- ,(let ((click-tests '("test_negative_get"
- "test_inspect_invalid_format")))
- ;; Disable integration tests
- (string-append "not integration and not "
- ;; These tests fail because we use Click 8.* instead of
- ;; Click 7
- (string-join click-tests " and not "))))
+ '("--ignore=tests/test_vault.py" ; depend on hvac and a live Vault
+ "-k" ,(let ((click-tests '("test_negative_get"
+ "test_inspect_invalid_format")))
+ ;; Disable integration tests
+ (string-append "not integration and not "
+ ;; These tests fail because we use Click 8.*
+ ;; instead of Click 7
+ (string-join click-tests " and not ")))
+ "tests")
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-for-click-8
(lambda _
(substitute* "dynaconf/cli.py"
(("click.get_os_args\\()") ;deprecated from Click 8.1+
- "sys.argv[1:]"))))
- (replace 'check
- (lambda* (#:key tests? test-flags #:allow-other-keys)
- (when tests?
- ;; These tests depend on hvac and a live Vault process.
- (delete-file "tests/test_vault.py")
- (apply invoke
- `("py.test" ,@test-flags "-v"
- "--cov-config" ".coveragerc"
- "--cov=dynaconf"
- "-l" "--tb=short"
- "--maxfail=1" "tests/"))))))))
+ "sys.argv[1:]")))))))
(propagated-inputs
(list python-click python-configobj python-dotenv-0.13.0
python-ruamel.yaml-0.16 python-toml python-tomli))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 28/92] gnu: zulip-term: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-28-ngraves@ngraves.fr
* gnu/packages/messaging.scm (zulip-term):
[build-system]: Move to pyproject-build-system.
[arguments]<#:test-flags>: Use it in place of check phase replacement.

Change-Id: Ia5be66a35b92d9a9229f450a7724e27167c02eda
---
gnu/packages/messaging.scm | 23 ++++++-----------------
1 file changed, 6 insertions(+), 17 deletions(-)

Toggle diff (37 lines)
diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index 497808b069f..cb72bfb3e25 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -3211,24 +3211,13 @@ (define-public zulip-term
(base32
"1xhhy3v4wck74a83avil0rnmsi2grrh03cww19n5mv80p2q1cjmf"))
(modules '((guix build utils)))
- (snippet
- '(begin
- (substitute* "setup.py"
- (("\\=\\=1\\.7") ">=1.7") ; pytest-mock
- (("\\=\\=2\\.5") ">=2.5") ; pytest-cov
- (("4\\.5\\.2") "4.4.2")) ; lxml
- #t))))
- (build-system python-build-system)
+ (snippet '(substitute* "setup.py"
+ (("\\=\\=1\\.7") ">=1.7") ; pytest-mock
+ (("\\=\\=2\\.5") ">=2.5") ; pytest-cov
+ (("4\\.5\\.2") "4.4.2"))))) ; lxml
+ (build-system pyproject-build-system)
(arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Delete failing tests.
- (delete-file "tests/cli/test_run.py")
- (invoke "pytest"))
- #t)))))
+ '(#:test-flags '("--ignore=tests/cli/test_run.py")))
(inputs
(list python-beautifulsoup4
python-lxml
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 30/92] gnu: python-dateutil: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-30-ngraves@ngraves.fr
* gnu/packages/time.scm (python-dateutil): Improve package style.
[build-system]: Move to pyproject-build-system.
[arguments]: Use <#:test-flags> instead of check phase replacement.

Change-Id: I252fbe47f04ba6a2fbcc497565cbf6e352f9d06c
---
gnu/packages/time.scm | 23 ++++++++---------------
1 file changed, 8 insertions(+), 15 deletions(-)

Toggle diff (37 lines)
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index 96fe9f561a0..552ac346c4a 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -242,22 +242,15 @@ (define-public python-dateutil
(uri (pypi-uri "python-dateutil" version))
(patches (search-patches "python-dateutil-pytest-compat.patch"))
(sha256
- (base32
- "11iy7m4bp2lgfkcl0r6xzf34bvk7ppjmsyn2ygfikbi72v6cl8q1"))))
- (build-system python-build-system)
+ (base32 "11iy7m4bp2lgfkcl0r6xzf34bvk7ppjmsyn2ygfikbi72v6cl8q1"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:phases (modify-phases %standard-phases
- (replace 'check
- (lambda _
- ;; Delete tests that depend on "freezegun" to avoid a
- ;; circular dependency.
- (delete-file "dateutil/test/test_utils.py")
- (delete-file "dateutil/test/test_rrule.py")
-
- ;; XXX: Fails to get timezone from /etc/localtime.
- (delete-file "dateutil/test/test_tz.py")
-
- (invoke "pytest" "-vv"))))))
+ (list
+ #:test-flags '(list ; avoid freezegun dependency
+ "--ignore=dateutil/test/test_utils.py"
+ "--ignore=dateutil/test/test_rrule.py"
+ ;; XXX: Fails to get timezone from /etc/localtime.
+ "--ignore=dateutil/test/test_tz.py")))
(native-inputs
(list python-pytest python-pytest-cov python-setuptools-scm))
(propagated-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 29/92] gnu: python-pypujs: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-29-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-pypujs): Improve package style.
[arguments]<#:test-flags>: Use it in place of check phase
replacement.
<#:phases>: Clarify phase disable-pyramid.

Change-Id: If8073cc4e9a8a86003000e7157985fe382de7b4f
---
gnu/packages/python-xyz.scm | 15 +++++----------
1 file changed, 5 insertions(+), 10 deletions(-)

Toggle diff (30 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0863ce8fa01..6d6169ec1e1 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -6453,18 +6453,13 @@ (define-public python-pypugjs
(build-system pyproject-build-system)
(arguments
(list
+ #:test-flags '(list "pypugjs/testsuite/")
#:phases #~(modify-phases %standard-phases
- ;; Our pyramid is outdated and pyramid-mako is not packaged.
(add-after 'unpack 'disable-pyramid
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "setup.py"
- (("'pyramid")
- "#'pyramid"))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "-m" "pytest" "-v"
- "pypugjs/testsuite/")))))))
+ (lambda _
+ ;; pyramid is outdated and pyramid-mako is unpackaged.
+ (substitute* "setup.cfg"
+ (("'(pyramid|pyramid-mako)[^']*',") "")))))))
(native-inputs (list python-coverage
python-django
python-jinja2
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 32/92] gnu: python-asdf-astropy: Fix build.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-32-ngraves@ngraves.fr
* gnu/packages/astronomy.scm (python-asdf-astropy):
[arguments]<#:test-flags>: Remove uneeded faulty field.

Change-Id: I8708e91db28de10f390d9c40a6c667eec33bf362
---
gnu/packages/astronomy.scm | 2 --
1 file changed, 2 deletions(-)

Toggle diff (15 lines)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 44a953379b4..de5193d9b83 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4942,8 +4942,6 @@ (define-public python-asdf-astropy
(build-system pyproject-build-system)
(arguments
(list
- #:test-flags
- #~(list "-n" "auto")
#:phases #~(modify-phases %standard-phases
(add-before 'check 'set-home-env
(lambda _ (setenv "HOME" "/tmp"))))))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 31/92] gnu: python-nbval: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-31-ngraves@ngraves.fr
* gnu/packages/python-check.scm (python-nbval):
[build-system]: Move to pyproject-build-system.
[arguments]: Move <#:phases> check phase replacement into proper
<#:test-flags>.
[propagated-inputs]: Add python-coverage which should have been
there.

Change-Id: I93aa282399eb52636ee5561b5d8fb7bb5b93f9e0
---
gnu/packages/python-check.scm | 48 ++++++++++++++++++-----------------
1 file changed, 25 insertions(+), 23 deletions(-)

Toggle diff (66 lines)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 913fc00ffc5..8e2164a82db 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -1574,34 +1574,36 @@ (define-public python-nbval
(uri (pypi-uri "nbval" version))
(sha256
(base32 "0h3xrnw0mj1srigrx2rfnd73h8s0xjycclmjs0vx7qkfyqpcvvyg"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'check 'fix-test
- (lambda _
- ;; This test fails because of a mismatch in the output of LaTeX
- ;; equation environments. Seems OK to skip.
- (delete-file
- "tests/ipynb-test-samples/test-latex-pass-correctouput.ipynb")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv" "-k"
- (string-append
- ;; This only works with Pytest < 5.
- "not nbdime_reporter"
- ;; https://github.com/computationalmodelling/nbval/pull/148.
- " and not test_timeouts"
- ;; It seems the output format has changed; the following
- ;; test fails with "Unexpected output fields from
- ;; running code: {'text/plain'}".
- " and not test_conf_ignore_stderr "))))))))
+ (list
+ #:test-flags
+ '(list
+ ;; This test fails because of a mismatch in the output of LaTeX
+ ;; equation environments. Seems OK to skip.
+ "--ignore=tests/ipynb-test-samples/test-latex-pass-correctouput.ipynb"
+ "-k" (string-append
+ ;; This only works with Pytest < 5.
+ "not nbdime_reporter"
+ ;; https://github.com/computationalmodelling/nbval/pull/148.
+ " and not test_timeouts"
+ ;; It seems the output format has changed; the following
+ ;; test fails with "Unexpected output fields from
+ ;; running code: {'text/plain'}".
+ " and not test_conf_ignore_stderr "))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'fix-test
+ (lambda _
+ ;; This test fails because of a mismatch in the output of LaTeX
+ ;; equation environments. Seems OK to skip.
+ (delete-file "tests/\
+ipynb-test-samples/test-latex-pass-correctouput.ipynb"))))))
(native-inputs
(list python-pytest python-pytest-cov python-sympy))
(propagated-inputs
(list python-ipykernel python-jupyter-client python-nbformat
- python-six))
+ python-six python-coverage))
(home-page "https://github.com/computationalmodelling/nbval")
(synopsis "Pytest plugin to validate Jupyter notebooks")
(description
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 33/92] gnu: python-pytest-runner: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-33-ngraves@ngraves.fr
* gnu/packages/check.scm (python-pytest-runner):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Remove check phase replacement. Update
<#:tests?> refusal comment.
[native-inputs]: Add python-pip, python-pypa-build,
python-setuptools and python-wheel.

Change-Id: Id36e7ed4a3cec6098f0877f48f3fbcbd8007f3c3
---
gnu/packages/check.scm | 14 +++++---------
1 file changed, 5 insertions(+), 9 deletions(-)

Toggle diff (37 lines)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 15d2910603b..5708fa91acd 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1640,10 +1640,10 @@ (define-public python-pytest-runner
(sha256
(base32
"11dnhxnjmh4nf1j8rnvx944ha3wg8ggrgrwdcx4c7d19xmi57n5l"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
- ;; FIXME: The test suite requires 'python-flake8' and 'python-black',
+ ;; FIXME: The test suite requires 'python-pytest-virtualenv',
;; but that introduces a circular dependency.
#:tests? #f
#:phases
@@ -1657,14 +1657,10 @@ (define-public python-pytest-runner
(lambda _
(let ((whl (car (find-files "dist" "\\.whl$"))))
(invoke "pip" "--no-cache-dir" "--no-input"
- "install" "--no-deps" "--prefix" #$output whl))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (invoke "pytest" "-vv")
- (format #t "test suite not run~%")))))))
+ "install" "--no-deps" "--prefix" #$output whl)))))))
(native-inputs
- (list python-pypa-build python-setuptools-scm python-wheel))
+ (list python-pip python-pypa-build python-pytest
+ python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/pytest-dev/pytest-runner")
(synopsis "Invoke py.test as a distutils command")
(description
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 34/92] gnu: gunicorn: Update to 21.2.0.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-34-ngraves@ngraves.fr
* gnu/packages/python-web.scm (gunicorn): Update to 21.2.0.

Change-Id: Ia9931763ff45ee8e3f925ce54c20bce6549d809a
---
gnu/packages/python-web.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)

Toggle diff (23 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 494b11422f3..dc868102572 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -6055,14 +6055,13 @@ (define-public python-uvloop
(define-public gunicorn
(package
(name "gunicorn")
- (version "20.1.0")
+ (version "21.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "gunicorn" version))
(sha256
- (base32
- "1s7670qw36x90bgmazmgib170i5gnpyb2ypxzlla7y0mpasniag0"))))
+ (base32 "0cqhr2g880snpi45qvvch288m4fdyd5vqrcz3gk9hkv33pzqpv48"))))
(outputs '("out" "doc"))
(build-system pyproject-build-system)
(arguments
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 35/92] gnu: python-unidecode: Update to 1.3.8.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-35-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.3.8.
[build-system]: Move to pyproject-build-system.

Change-Id: I6e31f7af905bb2a024e8a7f7112732bcadbdf739
---
gnu/packages/python-xyz.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)

Toggle diff (24 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6d6169ec1e1..ab325e5e35e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5968,14 +5968,14 @@ (define-public python-rollbar
(define-public python-unidecode
(package
(name "python-unidecode")
- (version "1.1.1")
+ (version "1.3.8")
(source (origin
(method url-fetch)
(uri (pypi-uri "Unidecode" version))
(sha256
(base32
- "1s6cp2lv4m0f00hjckjz8p6m7d3n3v16jvg353llf5ia1iqsnsib"))))
- (build-system python-build-system)
+ "1x620s4dk4d501pivhlfzbi2d1r5fnm9cssqwkn76f7d8sfk9nyg"))))
+ (build-system pyproject-build-system)
(home-page "https://pypi.org/project/Unidecode/")
(synopsis "ASCII transliterations of Unicode text")
(description
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 36/92] gnu: python-cbor2: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-36-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-cbor2):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: I2e27fa48950aa9d10e140bfbdc12df3d22661282
---
gnu/packages/python-web.scm | 10 +---------
1 file changed, 1 insertion(+), 9 deletions(-)

Toggle diff (23 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index dc868102572..aa04a02bad5 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1000,15 +1000,7 @@ (define-public python-cbor2
(uri (pypi-uri "cbor2" version))
(sha256
(base32 "15y78xcc3zkmvj1mdzz8gyhf3apbl91073kwhzbjk5abc1civwlw"))))
- (build-system python-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv")))))))
+ (build-system pyproject-build-system)
(native-inputs (list python-pytest python-pytest-cov python-setuptools-scm))
(home-page "https://github.com/agronholm/cbor2")
(synopsis "Concise Binary Object Representation (CBOR) (de)serializer")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 37/92] gnu: python-tinycss: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-37-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-tinycss):
[build-system]: Move to pyproject-build-system.
[arguments]<#:test-flags>: Ignore failing test.

Change-Id: I972a3c6390df5f8af79c952292db8a4e24a4aa33
---
gnu/packages/python-web.scm | 16 +++-------------
1 file changed, 3 insertions(+), 13 deletions(-)

Toggle diff (30 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index aa04a02bad5..88dc08c18f6 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -5874,20 +5874,10 @@ (define-public python-tinycss
(uri (pypi-uri "tinycss" version))
(sha256
(base32 "0vkifr595h28ymkjhrswwf0bm23lhznh5f44xyp7x7jy1ssnyc0j"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'disable-flake8-isort
- ;; Flake8 and isort tests fail.
- (lambda _
- (substitute* "setup.cfg" ((" --flake8 --isort") ""))
- #t))
- (replace 'check
- (lambda _
- ;; Disable failing test.
- (invoke "python" "-m" "pytest" "-k"
- "not test_speedups"))))))
+ (list #:test-flags
+ '(list "-k" "not test_speedups")))
(native-inputs
(list python-pytest-cov python-pytest-flake8 python-pytest-isort
python-pytest-runner))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 38/92] gnu: behave: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-38-ngraves@ngraves.fr
* gnu/packages/check.scm (behave):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: I9ea513fb49b71d9187461ef55c2a6ecab2844a1d
---
gnu/packages/check.scm | 8 +-------
1 file changed, 1 insertion(+), 7 deletions(-)

Toggle diff (21 lines)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 5708fa91acd..1d0be03d406 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -2990,13 +2990,7 @@ (define-public behave
(sha256
(base32
"0sv94wagi214h0l91zn8m04f78x5wn83vqxib81hnl1qahvx9hq7"))))
- (build-system python-build-system)
- (arguments
- '(#:phases (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-c" "/dev/null" "-vv")))))))
+ (build-system pyproject-build-system)
(native-inputs
(list python-mock python-nose python-pathpy python-pyhamcrest
python-pytest))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 39/92] gnu: python-cucumber-tag-expressions: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-39-ngraves@ngraves.fr
* gnu/packages/python-check.scm (python-cucumber-tag-expressions):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: Ibf0d92aa761f7a00f8c2c806a8bbd38669987ad7
---
gnu/packages/python-check.scm | 11 +----------
1 file changed, 1 insertion(+), 10 deletions(-)

Toggle diff (24 lines)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 8e2164a82db..a3eecba5495 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -262,16 +262,7 @@ (define-public python-cucumber-tag-expressions
(uri (pypi-uri "cucumber-tag-expressions" version))
(sha256
(base32 "0q7rn4l4ppjd1zsglr37ccc5xccg4iigaw827282zfzfsvzda573"))))
- (build-system python-build-system)
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Ignore the configuration file since we don't
- ;; need HTML reports, etc.
- (invoke "pytest" "-c" "/dev/null" "-vv")))))))
+ (build-system pyproject-build-system)
(native-inputs
(list python-invoke python-pathpy python-pytest))
(home-page "https://github.com/cucumber/tag-expressions-python")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 40/92] gnu: python-flask-login: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-40-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-flask-login):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: I9f3abb36b642ad2860c68f13f9d9e8b8b5f40811
---
gnu/packages/python-web.scm | 9 +--------
1 file changed, 1 insertion(+), 8 deletions(-)

Toggle diff (22 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 88dc08c18f6..4d3fc75bb3c 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -4856,14 +4856,7 @@ (define-public python-flask-login
(file-name (git-file-name name version))
(sha256
(base32 "12yw01ccgjn9c88cbkrd6k1ykjxd8fxip2b1isvxjirphnlqhn9g"))))
- (build-system python-build-system)
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv" "-c" "/dev/null")))))))
+ (build-system pyproject-build-system)
(propagated-inputs
(list python-flask))
(native-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 41/92] gnu: python-parse-type: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-41-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-parse-type):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: Iccb3303996480bef3c151559884d1a8c488385cd
---
gnu/packages/python-xyz.scm | 9 +--------
1 file changed, 1 insertion(+), 8 deletions(-)

Toggle diff (22 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index ab325e5e35e..169c1df2112 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4766,14 +4766,7 @@ (define-public python-parse-type
(sha256
(base32
"07smqnzc9km7sbvxfyx4gdm9njrx58x8grdw6gs4gva81rk3rd10"))))
- (build-system python-build-system)
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv" "-c" "/dev/null")))))))
+ (build-system pyproject-build-system)
(propagated-inputs (list python-six python-parse))
(native-inputs (list python-pytest))
(home-page "https://github.com/jenisys/parse_type")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 42/92] gnu: python-amqp: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-42-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-amqp):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Remove unneeded field.
<#:test-flags>: Ignore failing test.

Change-Id: I8fb99db7fbd6c669a929b95829f9db2fea0691a5
---
gnu/packages/python-xyz.scm | 14 +++-----------
1 file changed, 3 insertions(+), 11 deletions(-)

Toggle diff (28 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 169c1df2112..1d324af423e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -19620,18 +19620,10 @@ (define-public python-amqp
(uri (pypi-uri "amqp" version))
(sha256
(base32 "1qmmffiy48nady7is8529vxcyqbq88v5zgawqr3fk4q8rkz166rc"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv"
- "-c" "/dev/null" ;take control over pytest options
- ;; Integration tests require network connectivity.
- "--ignore" "t/integration")))))))
+ (list ; Integration tests require network connectivity.
+ #:test-flags '(list "--ignore=t/integration")))
(native-inputs (list python-pytest))
(propagated-inputs (list python-vine))
(home-page "https://github.com/celery/py-amqp")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 44/92] gnu: python-sphinx: Ignore failing tests.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-44-ngraves@ngraves.fr
* gnu/packages/sphinx.scm (python-sphinx-5):
[arguements]<#:test-flags>: Ignore failing tests.

Change-Id: Ic57905e247a693107a31efc36048025879119ebe
---
gnu/packages/sphinx.scm | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)

Toggle diff (18 lines)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 651c5d5b581..ea643040fbf 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -174,7 +174,10 @@ (define-public python-sphinx-5
"not test_latex_images"
;; XXX: Not clear why this fails with a version comparison
;; failure.
- " and not test_needs_sphinx"))
+ " and not test_needs_sphinx"
+ " and not test_viewcode"
+ " and not test_additional_targets_should_not_be_translated"
+ " and not test_additional_targets_should_be_translated"))
#:phases
'(modify-phases %standard-phases
(add-before 'check 'pre-check
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 45/92] gnu: python-sphinx-autodoc-typehints: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-45-ngraves@ngraves.fr
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Move 'check phase replacement...
... to argument <#:test-flags>.

Change-Id: I2b41dffd5ee35442e1bb42f426bff69e17648785
---
gnu/packages/sphinx.scm | 14 +++++---------
1 file changed, 5 insertions(+), 9 deletions(-)

Toggle diff (36 lines)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index ea643040fbf..195cd63ae61 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -1135,9 +1135,12 @@ (define-public python-sphinx-autodoc-typehints
(sha256
(base32
"049dlay21f4bccig31fkbzq2m8v0h6g63p1cn3dxay9q3h0mzgs0"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
+ ;; This test requires to download an objects.inv file
+ ;; from the Sphinx website.
+ #:test-flags '(list "-k" "not test_format_annotation")
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'pretend-version
@@ -1145,14 +1148,7 @@ (define-public python-sphinx-autodoc-typehints
;; without the git metadata available, the version string is set to
;; '0.0.0'.
(lambda _
- (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv" "tests"
- ;; This test requires to download an objects.inv file
- ;; from the Sphinx website.
- "-k" "not test_format_annotation")))))))
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
(propagated-inputs (list python-sphinx))
(native-inputs
(list python-nptyping
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 43/92] gnu: python-cbor: Update home-page.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-43-ngraves@ngraves.fr
* gnu/packages/serialization.scm (python-cbor): Update home-page.
[build-system]: Move to pyproject-build-system.

Change-Id: I0262007ae19813b89f42eb21c388d41362638a4f
---
gnu/packages/serialization.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)

Toggle diff (17 lines)
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm
index 6c784896ec3..728d6404bb9 100644
--- a/gnu/packages/serialization.scm
+++ b/gnu/packages/serialization.scm
@@ -834,8 +834,8 @@ (define-public python-cbor
(sha256
(base32
"1dmv163cnslyqccrybkxn0c9s1jk1mmafmgxv75iamnz5lk5l8hk"))))
- (build-system python-build-system)
- (home-page "https://bitbucket.org/bodhisnarkva/cbor")
+ (build-system pyproject-build-system)
+ (home-page "https://github.com/brianolson/cbor_py")
(synopsis "Implementation of the Concise Binary Object Representation")
(description
"Python-cbor provides an implementation of the Concise Binary Object
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 46/92] gnu: abjad: Update to 3.19.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-46-ngraves@ngraves.fr
* gnu/packages/music.scm (abjad): Update to 3.19.
[arguments]: Remove uneeded field.
[native-inputs]: Remove all native-inputs except python-pytest.

Change-Id: Iad5b855734650d15dd0a2a8db6312e8d9a3de24a
---
gnu/packages/music.scm | 31 +++----------------------------
1 file changed, 3 insertions(+), 28 deletions(-)

Toggle diff (55 lines)
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 38133cedc9e..b5895b9a494 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1684,8 +1684,7 @@ (define-public music21
(define-public abjad
(package
(name "abjad")
- ;; XXX: The latest version which supports current Guix's Python 3.9.9.
- (version "3.4")
+ (version "3.19")
(source
(origin
(method git-fetch)
@@ -1694,36 +1693,12 @@ (define-public abjad
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0s63vk9fifp0im9c31kb9ck39mbaxhrls993d8fvg0nkg41z1jnz"))))
+ (base32 "1cgcnmwzxx2hr21pqm1hbsknpad748yw3gf7jncsb3w1azhjypzm"))))
(build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- ;; XXX. Permit newer version of uqbar, remove for >3.4. Remove in
- ;; the next update.
- (add-after 'unpack 'loosen-requirements
- (lambda _
- (substitute* "setup.py"
- ((", <0\\.5\\.0") ""))))
- ;; FIXME: Check why it's failing with this: Note: compilation failed
- ;; and \version outdated, did you update input syntax with
- ;; convert-ly?
- (add-before 'check 'disable-failing-tests
- (lambda _
- (substitute* "tests/test_ext_sphinx.py"
- (("def test_ext_sphinx_01") "def __off_test_ext_sphinx_01")))))))
(inputs
(list lilypond))
(native-inputs
- (list python-flake8
- python-isort
- python-mypy
- python-pytest
- python-pytest-cov
- python-pytest-helpers-namespace
- python-six
- python-sphinx-autodoc-typehints))
+ (list python-pytest))
(propagated-inputs
(list python-quicktions
python-ply
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 48/92] gnu: abjad-ext-nauert: Update to 3.19.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-48-ngraves@ngraves.fr
* gnu/packages/music.scm (abjad-ext-nauert): Update to 3.19.
[native-inputs]: Remove all native-inputs except lilypond and
python-pytest.

Change-Id: I593fa8e8f3af25cfdd0d8bc476d8c37245f23c33
---
gnu/packages/music.scm | 16 +++-------------
1 file changed, 3 insertions(+), 13 deletions(-)

Toggle diff (38 lines)
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index eb2fc5edf0a..37fe94b56de 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1743,7 +1743,7 @@ (define-public abjad-ext-rmakers
(define-public abjad-ext-nauert
(package
(name "abjad-ext-nauert")
- (version "3.4")
+ (version "3.19")
(source
(origin
(method git-fetch)
@@ -1752,20 +1752,10 @@ (define-public abjad-ext-nauert
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32
- "05hr2lr6myzi493k8vc19cqzraxxnbdwlckwbnras19l5g5ns38x"))))
+ (base32 "0j4pf4h27jm3df0dn2rwkdx6zqcxvr7pqchbaa9rffz7q4hbakmf"))))
(build-system pyproject-build-system)
(native-inputs
- (list lilypond
- python-black
- python-flake8
- python-iniconfig
- python-isort
- python-mypy
- python-pytest
- python-pytest-cov
- python-pytest-helpers-namespace
- python-sphinx-autodoc-typehints))
+ (list lilypond python-pytest))
(propagated-inputs
(list abjad))
(home-page "https://abjad.github.io")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 49/92] gnu: python-pytest-remotedata: Ignore failing test.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-49-ngraves@ngraves.fr
* gnu/packages/python-check.scm (python-pytest-remotedata)
[arguments]<#:test-flags>: Ignore failing tests.

Change-Id: Ic351559a0c9ce49be6ce4695cceef46f8b6384ba
---
gnu/packages/python-check.scm | 1 +
1 file changed, 1 insertion(+)

Toggle diff (14 lines)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index a3eecba5495..f2a355bb413 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -840,6 +840,7 @@ (define-public python-pytest-remotedata
(list
#:test-flags #~(list "-k" (string-append
"not test_default_behavior"
+ " and not test_strict_behavior"
" and not test_strict_with_decorator"))))
(native-inputs
(list python-pytest python-setuptools python-setuptools-scm
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 51/92] gnu: python-cairosvg: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-51-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-cairosvg):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove field.

Change-Id: Ibf6d045ddaea5f6a83c70fea2c307f25a9fed730
---
gnu/packages/python-xyz.scm | 7 +------
1 file changed, 1 insertion(+), 6 deletions(-)

Toggle diff (20 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1d324af423e..facad6c8689 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -29751,12 +29751,7 @@ (define-public python-cairosvg
(uri (pypi-uri "CairoSVG" version))
(sha256
(base32 "1ylsisha2cc4w0yydxwhy7idkfw1inl9fsipxsrm7vyby080vi9z"))))
- (build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _ (invoke "pytest"))))))
+ (build-system pyproject-build-system)
(propagated-inputs
(list python-cairocffi python-cssselect2 python-defusedxml
python-pillow python-tinycss2))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 50/92] gnu: python-pytest-toolbox: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-50-ngraves@ngraves.fr
* gnu/packages/python-check.scm (python-pytest-toolbox):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Restrict 'check phase replacement to
'pre-check phase.

Change-Id: Id0804db32d30314076d1e411711881bbe3a3f6e1
---
gnu/packages/python-check.scm | 20 +++++++++-----------
1 file changed, 9 insertions(+), 11 deletions(-)

Toggle diff (34 lines)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index f2a355bb413..ccda2042fb6 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -1481,18 +1481,16 @@ (define-public python-pytest-toolbox
(file-name (git-file-name name version))
(sha256
(base32 "1wqkr3g5gmqdxmhzfsxbwy8pm3cadaj6a8cxq58w9bacly4hqbh0"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? inputs outputs #:allow-other-keys)
- (when tests?
- (substitute* "setup.cfg"
- ((".*timeout.*") ""))
- ;; Make the installed plugin discoverable by Pytest.
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest" "-vv")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (substitute* "setup.cfg"
+ ((".*timeout.*") ""))))))))
(native-inputs
(list python-pydantic python-pytest python-pytest-isort))
(home-page "https://github.com/samuelcolvin/pytest-toolbox")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 52/92] gnu: python-docspec-python: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-52-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-docspec-python):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Remove uneeded field.

Change-Id: Ib728c442a130eecebe4dff1e364d997bcca76076
---
gnu/packages/python-xyz.scm | 12 ++----------
1 file changed, 2 insertions(+), 10 deletions(-)

Toggle diff (25 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index facad6c8689..323bbfc1b4d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -812,16 +812,8 @@ (define-public python-docspec-python
(base32 "0n8m52vxmlvkj7p5jmd4rfdks65rrp4q4vzak44y6kbg9l5qa6y4"))))
(build-system pyproject-build-system)
(arguments
- (list
- #:tests? #false ;there are none
- #:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- ;; We don't have black 23.
- (substitute* "pyproject.toml"
- (("23.1.0") "22.3.0")))))))
- (propagated-inputs (list python-black python-docspec python-nr-util))
+ (list #:tests? #false)) ;there are none
+ (propagated-inputs (list python-docspec python-nr-util))
(native-inputs (list python-poetry-core))
(home-page "https://github.com/NiklasRosenstein/docspec/")
(synopsis "Produce docspec data from Python source code")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 53/92] gnu: python-jaraco-classes: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-53-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-jaraco-classes):
[build-system]: Move to pyproject-build-system.
[arguments]: Convert <#:phases> to <#:test-flags>.

Change-Id: I8fbe633db7533f933a342b47a4a2191ccf13a8c5
---
gnu/packages/python-xyz.scm | 13 +++----------
1 file changed, 3 insertions(+), 10 deletions(-)

Toggle diff (27 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 323bbfc1b4d..32991d57a1f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11722,17 +11722,10 @@ (define-public python-jaraco-classes
(uri (pypi-uri "jaraco.classes" version))
(sha256
(base32 "0d6g7qvfv1jlzbzh6asprqdblqd59grvlvr3nwbdqdqrmwlbfm7d"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Do not test the myproject.toml build as it tries to pull
- ;; dependencies from the Internet.
- (invoke "pytest" "-vv" "-k" "not project")))))))
+ (list ; Do not test the myproject.toml build as it pulls dependencies.
+ #:test-flags '(list "-k" "not project")))
(native-inputs
(list python-pytest
python-pytest-black
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 54/92] gnu: python-jaraco-context: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-54-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm:
(python-jaraco-context)[build-system]: Move to pyproject-build-system.
(python-jaraco)[arguments]: Convert <#:phases> to <#:test-flags>.

Change-Id: Ifc9b8fc4a9a6c1c2f37fd014eeee1205cd2eb2c4
---
gnu/packages/python-xyz.scm | 13 ++++---------
1 file changed, 4 insertions(+), 9 deletions(-)

Toggle diff (33 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 32991d57a1f..654224ee17e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11818,7 +11818,7 @@ (define-public python-jaraco-context-bootstrap
(uri (pypi-uri "jaraco.context" version))
(sha256
(base32 "0hbjm1rpxf4pzmbdp9rh3ali4zqnlcr8m97bhh1nizxvzcpxim7h"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments (list #:tests? #f))
(native-inputs (list python-setuptools-scm))
(home-page "https://github.com/jaraco/jaraco.context")
@@ -11835,14 +11835,9 @@ (define-public python-jaraco-context
(package-arguments python-jaraco-context-bootstrap)
((#:tests? _ #f)
(not (%current-target-system)))
- ((#:phases phases #~%standard-phases)
- #~(modify-phases #$phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Do not test the myproject.toml build as it tries to pull
- ;; dependencies from the Internet.
- (invoke "pytest" "-vv" "-k" "not project"))))))))
+ ;; Do not test the myproject.toml build as it pulls dependencies.
+ ((#:test-flags test-flags '())
+ '(list "-k" "not project"))))
(native-inputs
(modify-inputs
(package-native-inputs python-jaraco-context-bootstrap)
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 55/92] gnu: python-jaraco-functools: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-55-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm:
(python-jaraco-functools-bootstrap)[build-system]: Move to
pyproject-build-system.
(python-jaraco-functools)[arguments]: Convert <#:phases> to
<#:test-flags>.

Change-Id: Id41967b3cb426045877ceccd9b391d545d759560
---
gnu/packages/python-xyz.scm | 18 ++++++------------
1 file changed, 6 insertions(+), 12 deletions(-)

Toggle diff (38 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 654224ee17e..93d2a5bb07b 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11863,7 +11863,7 @@ (define-public python-jaraco-functools-bootstrap
(uri (pypi-uri "jaraco.functools" version))
(sha256
(base32 "186xqzs3bqhjwajnprxy3sc3h0w5vdld8spc1dxjnn9720yykq1i"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments (list #:tests? #f))
(native-inputs (list python-setuptools-scm))
(propagated-inputs (list python-more-itertools))
@@ -11881,17 +11881,11 @@ (define-public python-jaraco-functools
(package-arguments python-jaraco-functools-bootstrap)
((#:tests? _ #f)
(not (%current-target-system)))
- ((#:phases phases #~%standard-phases)
- #~(modify-phases #$phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Do not test the myproject.toml build as it tries to pull
- ;; dependencies from the Internet. Do not run a test that
- ;; tries to emulate a broken proprietary CI set-up, fails
- ;; to do so correctly, and then throws an error about it.
- (invoke "pytest" "-vv" "-k"
- "not project and not test_function_throttled"))))))))
+ ;; Do not test the myproject.toml build as it pulls dependencies.
+ ;; Do not run a test that tries to emulate a broken proprietary CI
+ ;; set-up, fails to do so correctly, and then throws an error.
+ ((#:test-flags test-flags '())
+ '(list "-k" "not project and not test_function_throttled"))))
(native-inputs
(modify-inputs
(package-native-inputs python-jaraco-functools-bootstrap)
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 47/92] gnu: abjad-ext-rmakers: Update to 3.19.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-47-ngraves@ngraves.fr
* gnu/packages/music.scm (abjad-ext-rmakers): Update to 3.19.
[native-inputs]: Remove all native-inputs except lilypond and
python-pytest.

Change-Id: I83f7d8c93d7f764ddc8416239873f4126fa66ce6
---
gnu/packages/music.scm | 16 +++-------------
1 file changed, 3 insertions(+), 13 deletions(-)

Toggle diff (38 lines)
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index b5895b9a494..eb2fc5edf0a 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1718,7 +1718,7 @@ (define-public abjad
(define-public abjad-ext-rmakers
(package
(name "abjad-ext-rmakers")
- (version "3.4")
+ (version "3.19")
(source
(origin
(method git-fetch)
@@ -1727,20 +1727,10 @@ (define-public abjad-ext-rmakers
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32
- "0wma9vzn42h1rhbzh2dwjsrzjhsi1yqdgn6wx1dfk78vaki6prd8"))))
+ (base32 "1y8s55b4mlsigm0xkk6qjpp08c75rv0swvjp0lj3cs6lgqdjxdjl"))))
(build-system pyproject-build-system)
(native-inputs
- (list lilypond
- python-black
- python-flake8
- python-iniconfig
- python-isort
- python-mypy
- python-pytest
- python-pytest-cov
- python-pytest-helpers-namespace
- python-sphinx-autodoc-typehints))
+ (list lilypond python-pytest))
(propagated-inputs
(list abjad))
(home-page "https://abjad.github.io")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 56/92] gnu: python-jaraco-packaging: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-56-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-jaraco-packaging):
[build-system]: Move to pyproject-build-system.
[arguments]<#:test-flags>: Ignore failing tests.

Change-Id: Ied9d42afe9b8ae30d2a3587e4ead770c8153c3c1
---
gnu/packages/python-xyz.scm | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)

Toggle diff (18 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 93d2a5bb07b..0301c53a5b8 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11911,7 +11911,10 @@ (define-public python-jaraco-packaging
(sha256
(base32
"0zimrnkh33b9g8ffw11mjh6kvs54cy5gcjw1h5cl1r7dc833dmkm"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:test-flags
+ '(list "-k" "not project and not test_revived_distribution")))
(propagated-inputs
(list python-pytest
python-pytest-checkdocs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 57/92] gnu: python-jaraco-test: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-57-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-jaraco-test):
[build-system]: Move to pyproject-build-system.
[arguments]: Convert <#:phases> to <#:test-flags>.

Change-Id: I926671bc2bb62abae24c26a4bddc304133b2c019
---
gnu/packages/python-xyz.scm | 6 +-----
1 file changed, 1 insertion(+), 5 deletions(-)

Toggle diff (19 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0301c53a5b8..3302892ee82 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11943,11 +11943,7 @@ (define-public python-jaraco-test
"0h0x8qmvfkfqvwdx2m7kwhn53sg26k8gkaas7s1730ak772zqrvz"))))
(build-system pyproject-build-system)
(arguments
- (list
- #:phases #~(modify-phases %standard-phases
- (replace 'check
- (lambda _
- (invoke "pytest" "-vv" "-k" "http"))))))
+ (list #:test-flags '(list "-k" "http")))
(propagated-inputs (list python-jaraco-context python-jaraco-functools))
(native-inputs (list python-flake8
python-pytest
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 58/92] gnu: python-nbstripout: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-58-ngraves@ngraves.fr
* gnu/packages/jupyter.scm (python-nbstripout):
[build-system]: Move to pyproject-build-system.
[arguments]: Convert 'check replacement phase from <#:phases> to
<#:test-flags>. Use gexp.

Change-Id: I4d97b0739c43371c149296b23951cb2c17129840
---
gnu/packages/jupyter.scm | 26 ++++++++++++--------------
1 file changed, 12 insertions(+), 14 deletions(-)

Toggle diff (40 lines)
diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm
index 2c982b4c214..cf3fa509966 100644
--- a/gnu/packages/jupyter.scm
+++ b/gnu/packages/jupyter.scm
@@ -801,21 +801,19 @@ (define-public python-nbstripout
(sha256
(base32
"1n57nvxsc94gz9w8ymi83bjkfhfwkpmx4y14m6gjrmlqd49m1aw6"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'delete-bad-tests
- (lambda _
- ;; These tests use git and hg, and they are sensitive to the
- ;; exact printed output.
- (for-each delete-file (list "tests/test-git.t"
- "tests/test-hg.t"
- "tests/test-status.t"
- "tests/test-uninstall.t"))))
- (add-before 'check 'set-CRAMSHELL
- (lambda _
- (setenv "CRAMSHELL" (which "bash")))))))
+ (list
+ ;; These tests use git and hg, and they are sensitive to the
+ ;; exact printed output.
+ #:test-flags '(map (lambda (test)
+ (string-append "--ignore=tests/test-" test ".t"))
+ '("git" "hg" "status" "uninstall"))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'set-CRAMSHELL
+ (lambda _
+ (setenv "CRAMSHELL" (which "bash")))))))
(propagated-inputs (list python-nbformat))
(native-inputs
(list python-pytest
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 59/92] gnu: Add ghc-xcb-types.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-59-ngraves@ngraves.fr
* gnu/packages/xorg.scm (ghc-xcb-types): New variable.

Change-Id: I42d1d49251e9c3d56aecf012a52fff34e678bd94
---
gnu/packages/xorg.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)

Toggle diff (59 lines)
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 2bc6946599c..6c894fc45bf 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -38,6 +38,7 @@
;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2023, 2024 John Kehayias <john.kehayias@protonmail.com>
;;; Copyright © 2023, 2024 Kaelyn Takata <kaelyn.alexi@protonmail.com>
+;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -62,6 +63,7 @@ (define-module (gnu packages xorg)
#:use-module (guix git-download)
#:use-module (guix build-system copy)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system haskell)
#:use-module (guix build-system meson)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
@@ -88,6 +90,9 @@ (define-module (gnu packages xorg)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages gperf)
#:use-module (gnu packages gtk)
+ #:use-module (gnu packages haskell)
+ #:use-module (gnu packages haskell-apps)
+ #:use-module (gnu packages haskell-check)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages inkscape)
#:use-module (gnu packages image)
@@ -963,6 +968,26 @@ (define-public glproto
(license license:x11)
(properties `((superseded . ,xorgproto)))))
+(define-public ghc-xcb-types
+ (package
+ (name "ghc-xcb-types")
+ (version "0.13.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (hackage-uri "xcb-types" version))
+ (sha256
+ (base32 "0qdfj4d83b1fjmlysqncgi65ldf3qnrsj4lync95mgbaq2kzxj2r"))))
+ (build-system haskell-build-system)
+ (properties '((upstream-name . "xcb-types")))
+ (inputs (list ghc-xml))
+ (home-page "http://community.haskell.org/~aslatter/code/xcb-types")
+ (synopsis "Parse XML files used by the XCB project")
+ (description
+ "This package provides types which mirror the structures used in the XCB code
+generation XML files and parses these XML files into Haskell data structures.")
+ (license license:bsd-3)))
+
(define-public iceauth
(package
(name "iceauth")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 60/92] gnu: python-sparse: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-60-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-sparse):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove unneeded field.

Change-Id: If3f785ede09ef79384b66166ad2f1c2a5f6e7c84
---
gnu/packages/python-xyz.scm | 9 +--------
1 file changed, 1 insertion(+), 8 deletions(-)

Toggle diff (22 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3302892ee82..0c88e48870c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8733,14 +8733,7 @@ (define-public python-sparse
(sha256
(base32
"1600xad37mff46xg80cy6bi3l2n6jm69j7sl19rzdmkcgyijfn2z"))))
- (build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "-m" "pytest" "-v")))))))
+ (build-system pyproject-build-system)
(propagated-inputs
(list python-numba python-numpy python-scipy))
(native-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 62/92] gnu: python-pint: Disable benchmark tests.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-62-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-pint):
[arguments]<#:test-flags>: Disable benchmark tests.

Change-Id: I0c6f0512f10f3e96da8b2fd4567df7d43703be10
---
gnu/packages/python-xyz.scm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)

Toggle diff (16 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 42bde34a486..2eeecfa644b 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1671,7 +1671,8 @@ (define-public python-pint
(arguments
(list
#:test-flags
- '(list "-k" (string-append
+ '(list "--ignore=pint/testsuite/benchmarks"
+ "-k" (string-append
;; This test tries to write to $HOME/.cache/pint.
"not test_auto"
;; Fails with "Group USCSLengthInternational already
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 61/92] gnu: python-pytest-enabler: Break dependency cycle.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-61-ngraves@ngraves.fr
* gnu/packages/check.scm
(python-pytest-enabler-bootstrap): Delete variable.
(python-pytest-enabler): Redefine variable.

* gnu/packages/python-xyz.scm
(python-jaraco-classes)[native-inputs]: Remove
python-pytest-enabler-bootstrap.
(python-jaraco-context-bootstrap): Delete variable.
(python-jaraco-context): Redefine variable.
(python-jaraco-functools-bootstrap): Delete variable.
(python-jaraco-functools): Redefine variable.

Change-Id: I96649093009beb7a3d0e9716eced778d4fc800e2
---
gnu/packages/check.scm | 80 +++++++-------------
gnu/packages/python-xyz.scm | 142 +++++++++++++++---------------------
2 files changed, 85 insertions(+), 137 deletions(-)

Toggle diff (264 lines)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 1d0be03d406..880d3cb46f3 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -2474,60 +2474,36 @@ (define-public python-lit
failures.")
(license license:ncsa)))
-;;; This is marked as a bootstrap package because it propagates bootstrapped
-;;; versions of jaraco-context and jaraco-functools.
-(define-public python-pytest-enabler-bootstrap
- (hidden-package
- (package
- (name "python-pytest-enabler-bootstrap")
- (version "1.2.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pytest-enabler" version))
- (sha256
- (base32 "023ymm0r2gpn5q7aikvx567s507j0zk46w41w6gxb69c688zgs73"))))
- (build-system python-build-system)
- (arguments (list #:tests? #f))
- (propagated-inputs
- (list python-jaraco-context-bootstrap
- python-jaraco-functools-bootstrap
- python-toml))
- (native-inputs (list python-setuptools-scm))
- (home-page "https://github.com/jaraco/pytest-enabler")
- (synopsis "Enable installed pytest plugins")
- (description "Enable installed pytest plugins")
- (license license:expat))))
-
(define-public python-pytest-enabler
- (package/inherit python-pytest-enabler-bootstrap
- (arguments
- (substitute-keyword-arguments
- (strip-keyword-arguments
- '(#:tests?)
- (package-arguments python-pytest-enabler-bootstrap))
- ((#:phases phases #~%standard-phases)
- #~(modify-phases #$phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "-m" "pytest" "-vv" "tests"))))))))
+ (package
+ (name "python-pytest-enabler")
+ (version "1.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pytest-enabler" version))
+ (sha256
+ (base32 "023ymm0r2gpn5q7aikvx567s507j0zk46w41w6gxb69c688zgs73"))))
+ (build-system pyproject-build-system)
+ (arguments (list #:tests? #f
+ #:test-flags '(list "tests")))
(propagated-inputs
- (modify-inputs (package-propagated-inputs python-pytest-enabler-bootstrap)
- (replace "python-jaraco-context-bootstrap" python-jaraco-context)
- (replace "python-jaraco-functools-bootstrap" python-jaraco-functools)))
- (native-inputs
- (modify-inputs (package-native-inputs python-pytest-enabler-bootstrap)
- (append python-pytest
- python-pytest-black
- python-pytest-checkdocs
- python-pytest-cov
- python-pytest-flake8
- python-pytest-mypy
- python-types-toml)))
- (properties (alist-delete 'hidden?
- (package-properties
- python-pytest-enabler-bootstrap)))))
+ (list python-jaraco-context
+ python-jaraco-functools
+ python-toml))
+ (native-inputs (list python-pytest
+ python-pytest-black
+ python-pytest-checkdocs
+ python-pytest-cov
+ python-pytest-flake8
+ python-pytest-mypy
+ python-setuptools
+ python-setuptools-scm
+ python-types-toml))
+ (home-page "https://github.com/jaraco/pytest-enabler")
+ (synopsis "Enable installed pytest plugins")
+ (description "Enable installed pytest plugins")
+ (license license:expat)))
(define-public python-pytest-freezegun
(package
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0c88e48870c..42bde34a486 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11724,7 +11724,6 @@ (define-public python-jaraco-classes
python-pytest-black
python-pytest-checkdocs
python-pytest-cov
- python-pytest-enabler-bootstrap ;OK since not propagated
python-pytest-flake8
python-pytest-mypy
python-setuptools-scm
@@ -11799,99 +11798,72 @@ (define-public python-jaraco-collections
@end itemize")
(license license:expat)))
-;;; Variant used to break a cycle with python-pytest-enabler.
-(define-public python-jaraco-context-bootstrap
- (hidden-package
- (package
- (name "python-jaraco-context-bootstrap")
- (version "4.1.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "jaraco.context" version))
- (sha256
- (base32 "0hbjm1rpxf4pzmbdp9rh3ali4zqnlcr8m97bhh1nizxvzcpxim7h"))))
- (build-system pyproject-build-system)
- (arguments (list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
- (home-page "https://github.com/jaraco/jaraco.context")
- (synopsis "Context managers Python library")
- (description "This Python library provides context managers-related
-procedures.")
- (license license:expat))))
-
(define-public python-jaraco-context
- (package/inherit python-jaraco-context-bootstrap
+ (package
(name "python-jaraco-context")
+ (version "4.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jaraco.context" version))
+ (sha256
+ (base32 "0hbjm1rpxf4pzmbdp9rh3ali4zqnlcr8m97bhh1nizxvzcpxim7h"))))
+ (build-system pyproject-build-system)
(arguments
- (substitute-keyword-arguments
- (package-arguments python-jaraco-context-bootstrap)
- ((#:tests? _ #f)
- (not (%current-target-system)))
- ;; Do not test the myproject.toml build as it pulls dependencies.
- ((#:test-flags test-flags '())
- '(list "-k" "not project"))))
+ (list #:tests? (not (%current-target-system))
+ ;; Do not test the myproject.toml build as it pulls dependencies.
+ #:test-flags '(list "-k" "not project")))
(native-inputs
- (modify-inputs
- (package-native-inputs python-jaraco-context-bootstrap)
- (append python-pytest
- python-pytest-black
- python-pytest-checkdocs
- python-pytest-cov
- python-pytest-enabler-bootstrap ;OK since not propagated
- python-pytest-flake8
- python-pytest-mypy)))
- (properties (alist-delete 'hidden? (package-properties
- python-jaraco-context-bootstrap)))))
-
-;;; Variant used to break a cycle with python-pytest-enabler.
-(define-public python-jaraco-functools-bootstrap
- (hidden-package
- (package
- (name "python-jaraco-functools-bootstrap")
- (version "3.5.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "jaraco.functools" version))
- (sha256
- (base32 "186xqzs3bqhjwajnprxy3sc3h0w5vdld8spc1dxjnn9720yykq1i"))))
- (build-system pyproject-build-system)
- (arguments (list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
- (propagated-inputs (list python-more-itertools))
- (home-page "https://github.com/jaraco/jaraco.functools")
- (synopsis "Python library extending Python's @code{functools}")
- (description "This library extends the standard @code{functools} Python
-module with a few extra procedures.")
- (license license:expat))))
+ (list python-pytest
+ python-pytest-black
+ python-pytest-checkdocs
+ python-pytest-cov
+ python-pytest-flake8
+ python-pytest-mypy
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (home-page "https://github.com/jaraco/jaraco.context")
+ (synopsis "Context managers Python library")
+ (description "This Python library provides context managers-related
+procedures.")
+ (license license:expat)))
(define-public python-jaraco-functools
- (package/inherit python-jaraco-functools-bootstrap
+ (package
(name "python-jaraco-functools")
+ (version "3.5.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jaraco.functools" version))
+ (sha256
+ (base32 "186xqzs3bqhjwajnprxy3sc3h0w5vdld8spc1dxjnn9720yykq1i"))))
+ (build-system pyproject-build-system)
(arguments
- (substitute-keyword-arguments
- (package-arguments python-jaraco-functools-bootstrap)
- ((#:tests? _ #f)
- (not (%current-target-system)))
- ;; Do not test the myproject.toml build as it pulls dependencies.
- ;; Do not run a test that tries to emulate a broken proprietary CI
- ;; set-up, fails to do so correctly, and then throws an error.
- ((#:test-flags test-flags '())
- '(list "-k" "not project and not test_function_throttled"))))
+ (list #:tests? (not (%current-target-system))
+ ;; Do not test the myproject.toml build as it pulls dependencies.
+ ;; Do not run a test that tries to emulate a broken proprietary
+ ;; CI set-up, fails to do so correctly, and then throws an error.
+ #:test-flags
+ '(list "-k" "not project and not test_function_throttled")))
(native-inputs
- (modify-inputs
- (package-native-inputs python-jaraco-functools-bootstrap)
- (append python-jaraco-classes
- python-pytest
- python-pytest-black
- python-pytest-checkdocs
- python-pytest-cov
- python-pytest-enabler-bootstrap ;OK since not propagated
- python-pytest-flake8
- python-pytest-mypy)))
- (properties (alist-delete 'hidden? (package-properties
- python-jaraco-functools-bootstrap)))))
+ (list python-jaraco-classes
+ python-pytest
+ python-pytest-black
+ python-pytest-checkdocs
+ python-pytest-cov
+ python-pytest-flake8
+ python-pytest-mypy
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs (list python-more-itertools))
+ (home-page "https://github.com/jaraco/jaraco.functools")
+ (synopsis "Python library extending Python's @code{functools}")
+ (description "This library extends the standard @code{functools} Python
+module with a few extra procedures.")
+ (license license:expat)))
(define-public python-jaraco-packaging
(package
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 63/92] gnu: python-apprise: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-63-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-apprise):
[arguments]: Convert <#:phases> check replacement into
<#:test-flags>.

Change-Id: I85c2ebadf65a4f1a7735042e784e56313c3de539
---
gnu/packages/python-xyz.scm | 7 +------
1 file changed, 1 insertion(+), 6 deletions(-)

Toggle diff (20 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2eeecfa644b..0d993fbb208 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -329,12 +329,7 @@ (define-public python-apprise
python-wheel))
(arguments
(list
- #:phases #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? inputs outputs #:allow-other-keys)
- (when tests?
- (delete-file "test/test_plugin_macosx.py")
- (invoke "pytest")))))))
+ #:test-flags '(list "--ignore=test/test_plugin_macosx.py")))
(home-page "https://github.com/caronc/apprise")
(synopsis
"Push notification Python library that works with many platforms")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:53 +0200
[PATCH 64/92] gnu: python-autoflake: Update to 2.3.1.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-64-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-autoflake): Update to 2.3.1.
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Add check phase replacement.
[native-inputs]: Add python-hatchling.

Change-Id: I0421107a98b1181a76e1874f23e6aa6e7709e434
---
gnu/packages/python-xyz.scm | 15 ++++++++++++---
1 file changed, 12 insertions(+), 3 deletions(-)

Toggle diff (33 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0d993fbb208..1f9ebc15e02 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -14890,14 +14890,23 @@ (define-public python-flake8-isort
(define-public python-autoflake
(package
(name "python-autoflake")
- (version "1.3.1")
+ (version "2.3.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "autoflake" version))
(sha256
- (base32 "0nzr057dbmgprp4a52ymafdkdd5zp2wcqf42913xc7hhvvdbj338"))))
- (build-system python-build-system)
+ (base32 "17lhrmz6h7pz2nald90p8gn3hhzbqwmd78819yf4b1habgf7b2y9"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (invoke "python" "test_autoflake.py"))))))
+ (native-inputs
+ (list python-hatchling))
(propagated-inputs
(list python-pyflakes))
(home-page "https://github.com/myint/autoflake")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 65/92] gnu: python-orderedmultidict: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-65-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-orderedmultidict):
[build-system]: Move to pyproject-build-system.

Change-Id: I092a1af47c3a8a0fd510c48df679e1045715c1e8
---
gnu/packages/python-xyz.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)

Toggle diff (18 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1f9ebc15e02..b21bb7e862d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9934,9 +9934,8 @@ (define-public python-orderedmultidict
(method url-fetch)
(uri (pypi-uri "orderedmultidict" version))
(sha256
- (base32
- "1bc2v0yflsxjyyjx4q9wqx0j3bvzcw9z87d5pz4iqac7bsxhn1q4"))))
- (build-system python-build-system)
+ (base32 "1bc2v0yflsxjyyjx4q9wqx0j3bvzcw9z87d5pz4iqac7bsxhn1q4"))))
+ (build-system pyproject-build-system)
(propagated-inputs
(list python-six))
(native-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 66/92] gnu: python-shtab: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-66-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-shtab):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: Ie27661677e88c5743423946d13bbe07a2c51bf36
---
gnu/packages/python-xyz.scm | 11 +----------
1 file changed, 1 insertion(+), 10 deletions(-)

Toggle diff (31 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b21bb7e862d..5a12dacbc8c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -35612,7 +35612,7 @@ (define-public python-shtab
(uri (pypi-uri "shtab" version))
(sha256
(base32 "127mymfm7r0hddk2vknqq34fj6dirj6ip990i3g4isx0lsd7pnsc"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(native-inputs
(list bash
python-pytest
@@ -35620,15 +35620,6 @@ (define-public python-shtab
python-pytest-timeout
python-setuptools-scm
python-wheel))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace
- 'check
- (lambda* (#:key tests? inputs outputs #:allow-other-keys)
- (when tests?
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest")))))))
(home-page "https://github.com/iterative/shtab")
(synopsis "Automagic shell tab completion for Python CLI applications")
(description
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 67/92] gnu: python-flake8-isort: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-67-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-flake8-isort):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: Ie8c32f6164030daf28760a58f33aff1d540fc6a5
---
gnu/packages/python-xyz.scm | 10 +---------
1 file changed, 1 insertion(+), 9 deletions(-)

Toggle diff (23 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5a12dacbc8c..191e53a494e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -14868,15 +14868,7 @@ (define-public python-flake8-isort
(uri (pypi-uri "flake8-isort" version))
(sha256
(base32 "0gk4q504v42hdzpkndczc0kkwnr85jn1h5pvb561jh65p91r6qyl"))))
- (build-system python-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv" "run_tests.py")))))))
+ (build-system pyproject-build-system)
(propagated-inputs (list python-flake8 python-isort))
(native-inputs (list python-pytest))
(home-page "https://github.com/gforcada/flake8-isort")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 68/92] gnu: python-xmltodict: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-68-ngraves@ngraves.fr
* gnu/packages/xml.scm (python-xmltodict):
[build-system]: Move to pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ifb8f3f4aa56255ca596d9c8ae5ae41be479daf90
---
gnu/packages/xml.scm | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)

Toggle diff (42 lines)
diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index c6ddae50ae6..2654f688d4b 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -33,6 +33,7 @@
;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz>
;;; Copyright © 2021 Matthew James Kraai <kraai@ftbfs.org>
+;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -67,6 +68,7 @@ (define-module (gnu packages xml)
#:use-module (gnu packages nss)
#:use-module (gnu packages perl)
#:use-module (gnu packages perl-check)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python)
#:use-module (gnu packages tls)
#:use-module (gnu packages web)
@@ -80,6 +82,7 @@ (define-module (gnu packages xml)
#:use-module (guix build-system meson)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix deprecation)
#:use-module (guix utils)
#:use-module (gnu packages linux)
@@ -1945,9 +1948,9 @@ (define-public python-xmltodict
(sha256
(base32
"08cadlb9vsb4pmzc99lz3a2lx6qcfazyvgk10pcqijvyxlwcdn2h"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(native-inputs
- (list python-coverage python-nose))
+ (list python-coverage python-nose python-setuptools python-wheel))
(home-page "https://github.com/martinblech/xmltodict")
(synopsis "Work with XML like you are working with JSON")
(description "This package provides a Python library to convert XML to
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 69/92] gnu: python-rich: Update to 13.7.1.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-69-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-rich): Update to 13.7.1.

Change-Id: I7fff0b124e989a0a5ace2c73c92d4b32497cf3e9
---
gnu/packages/python-xyz.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)

Toggle diff (24 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 191e53a494e..0cfb1dfd45d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -20247,7 +20247,7 @@ (define-public python-slugid
(define-public python-rich
(package
(name "python-rich")
- (version "13.7.0")
+ (version "13.7.1")
(source
(origin
;; There are no tests in the PyPI tarball.
@@ -20258,7 +20258,7 @@ (define-public python-rich
(file-name (git-file-name name version))
(sha256
(base32
- "0qyhw2vvk17qdmfrmi45z4dd0fkwx3l2qrf3iy0yc2y7pfgrmg9g"))))
+ "0jvkcp473c0icbb8md3grc3285j2cy0z0swxgk2g67d9n0zfdfzc"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 70/92] gnu: python-cmd2: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-70-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-cmd2):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Remove check phase replacement.
<#:test-flags>: Add field.

Change-Id: I55b4134fb6caa4af1a4988934043487fa85f9b9b
---
gnu/packages/python-xyz.scm | 14 +++-----------
1 file changed, 3 insertions(+), 11 deletions(-)

Toggle diff (28 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0cfb1dfd45d..9639b1027b5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -31721,18 +31721,10 @@ (define-public python-cmd2
(sha256
(base32
"0h1naik558qh48gx2iyy0a0khvw5fz0in69y84mbrhsm9nq7w3bm"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (invoke "pytest" "-vv" "-k"
- ;; These tests fail because no EDITOR is in PATH.
- "not test_find_editor_not_specified \
-and not test_transcript")
- (format #t "test suite not run~%")))))))
+ (list #:test-flags '(list "-k" "not test_find_editor_not_specified \
+and not test_transcript")))
(propagated-inputs
(list python-attrs python-colorama python-pyperclip python-wcwidth))
(native-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 71/92] gnu: Add python-sphinx-autodoc-typehints-5.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-71-ngraves@ngraves.fr
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints-5): New variable.

Change-Id: I465979829851681635d1073658f262a96758cfb5
---
gnu/packages/sphinx.scm | 7 +++++++
1 file changed, 7 insertions(+)

Toggle diff (20 lines)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 195cd63ae61..e6668146849 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -1162,6 +1162,13 @@ (define-public python-sphinx-autodoc-typehints
documenting acceptable argument types and return value types of functions.")
(license license:expat)))
+(define-public python-sphinx-autodoc-typehints-5
+ (package/inherit python-sphinx-autodoc-typehints
+ (propagated-inputs
+ (modify-inputs
+ (package-propagated-inputs python-sphinx-autodoc-typehints)
+ (replace "python-sphinx" python-sphinx-5)))))
+
(define-public python-sphinx-pytest
(package
(name "python-sphinx-pytest")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 72/92] gnu: python-uqbar: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-72-ngraves@ngraves.fr
* gnu/packages/graphviz.scm (python-uqbar): Improve package style.
[build-system]: Move to pyproject-build-system.
[arguments]: Convert 'check phase replacement to <#:test-flags>.

Change-Id: I536e60438e3f2d5592ab9cd34fe66104cfd117e2
---
gnu/packages/graphviz.scm | 10 ++--------
1 file changed, 2 insertions(+), 8 deletions(-)

Toggle diff (24 lines)
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index fe67d103865..8ef3642e7e7 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -213,15 +213,9 @@ (define-public python-uqbar
(base32
"0c573nzpm51qgz2g296f8pw8ys0i3r6daynxk06zagk5l5fgw9ar"))
(patches (search-patches "python-uqbar-python3.10.patch"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "-m" "pytest" "tests"))
- #t)))))
+ (list #:test-flags '(list "tests")))
(native-inputs
(list graphviz
python-flake8
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 74/92] gnu: python-uqbar: Update to 0.6.9.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-74-ngraves@ngraves.fr
* gnu/packages/graphviz.scm (python-uqbar): Update to 0.6.9.

Change-Id: Iee24cb1c66db162001c618d1f64a9e2406c1dacd
---
gnu/local.mk | 1 -
gnu/packages/graphviz.scm | 19 ++++-----------
.../patches/python-uqbar-python3.10.patch | 23 -------------------
3 files changed, 5 insertions(+), 38 deletions(-)
delete mode 100644 gnu/packages/patches/python-uqbar-python3.10.patch

Toggle diff (81 lines)
diff --git a/gnu/local.mk b/gnu/local.mk
index 9c61039239b..8d0bfd781f8 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1835,7 +1835,6 @@ dist_patch_DATA = \
%D%/packages/patches/python-sgmllib3k-assertions.patch \
%D%/packages/patches/python-sphinx-prompt-docutils-0.19.patch \
%D%/packages/patches/python-typeguard-python3.10.patch \
- %D%/packages/patches/python-uqbar-python3.10.patch \
%D%/packages/patches/python-wxwidgets-type-errors.patch \
%D%/packages/patches/qtdeclarative-5-disable-qmlcache.patch \
%D%/packages/patches/qtdeclarative-disable-qmlcache.patch \
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index b6c46a9d9ec..2c23b6abd5c 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -201,7 +201,7 @@ (define-public python-pygraphviz
(define-public python-uqbar
(package
(name "python-uqbar")
- (version "0.5.9")
+ (version "0.6.9")
(source
(origin
(method git-fetch)
@@ -210,20 +210,11 @@ (define-public python-uqbar
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32
- "0c573nzpm51qgz2g296f8pw8ys0i3r6daynxk06zagk5l5fgw9ar"))
- (patches (search-patches "python-uqbar-python3.10.patch"))))
+ (base32 "037qj3rymm6xzdpklddfhmfp2p1bq9fi3jrvxj6gmharphd5z869"))))
(build-system pyproject-build-system)
- (arguments
- (list #:test-flags
- '(list "tests"
- "-k" (string-append
- "not test_interpret_code_blocks_02 "
- "and not test_find_executable "
- "and not test_sphinx_api_1 "
- "and not test_sphinx_book_text_cached "
- "and not test_sphinx_book_text_uncached "
- "and not test_sphinx_book_text_broken_strict"))))
+ (arguments ; XXX: Disable failing tests.
+ (list #:test-flags '(list "tests" "-k" "not test_find_executable \
+and not test_sphinx_book_text_broken_strict")))
(native-inputs
(list graphviz
python-flake8
diff --git a/gnu/packages/patches/python-uqbar-python3.10.patch b/gnu/packages/patches/python-uqbar-python3.10.patch
deleted file mode 100644
index 164f0c0c64d..00000000000
--- a/gnu/packages/patches/python-uqbar-python3.10.patch
+++ /dev/null
@@ -1,23 +0,0 @@
-Since Python 3.10 the output of a CLI program created with argparse
-uses "options" instead of "optional arguments". This behaviour breaks
-the tests in python-uqbar.
-
---- a/tests/test_cli.py
-+++ b/tests/test_cli.py
-@@ -84,7 +84,7 @@ def test_call_help():
-
- speak like a cat
-
-- optional arguments:
-+ options:
- -h, --help show this help message and exit
- --version show program's version number and exit
- --loud be adamant
-@@ -101,6 +101,6 @@ def test_help():
- """
- usage: vox-aggregator [-h] [--version] {help,list,birds,mammals} ...
-
-- optional arguments:
-+ options:
- -h, --help show this help message and exit
- --version show program's version number and exit
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 76/92] gnu: python-zope-i18nmessageid: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-76-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-zope-i18nmessageid):
[build-system]: Move to pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ia9e142a53721bb6d7495d87b59d5f4f3b3f77bf2
---
gnu/packages/python-web.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)

Toggle diff (19 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 4d3fc75bb3c..c24a3daa2e1 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -3123,9 +3123,10 @@ (define-public python-zope-i18nmessageid
(uri (pypi-uri "zope.i18nmessageid" version))
(sha256
(base32 "14mx62khys82p2gmmf3m40x4jmvcz3rndvl6qik2n2qfp13n7ds7"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(native-inputs
- (list python-coverage python-zope-testrunner))
+ (list python-coverage python-setuptools
+ python-wheel python-zope-testrunner))
(propagated-inputs
(list python-six))
(home-page "https://pypi.org/project/zope.i18nmessageid/")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 73/92] gnu: python-uqbar: Upgrade to python-team branch.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-73-ngraves@ngraves.fr
* gnu/packages/graphviz.scm (python-uqbar): Upgrade to python-team
branch's changes.
[arguments]<#:test-flags>: Ignore failing tests.
[propagated-inputs]: Replace python-sphinx by python-sphinx-5.

Change-Id: I07122f953e806081d9134d39e16675eb0f839bbc
---
gnu/packages/graphviz.scm | 18 +++++++++++++++---
1 file changed, 15 insertions(+), 3 deletions(-)

Toggle diff (38 lines)
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index 8ef3642e7e7..b6c46a9d9ec 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -215,7 +215,15 @@ (define-public python-uqbar
(patches (search-patches "python-uqbar-python3.10.patch"))))
(build-system pyproject-build-system)
(arguments
- (list #:test-flags '(list "tests")))
+ (list #:test-flags
+ '(list "tests"
+ "-k" (string-append
+ "not test_interpret_code_blocks_02 "
+ "and not test_find_executable "
+ "and not test_sphinx_api_1 "
+ "and not test_sphinx_book_text_cached "
+ "and not test_sphinx_book_text_uncached "
+ "and not test_sphinx_book_text_broken_strict"))))
(native-inputs
(list graphviz
python-flake8
@@ -224,8 +232,12 @@ (define-public python-uqbar
python-pytest
python-pytest-cov))
(propagated-inputs
- (list python-black python-sphinx python-sphinx-rtd-theme
- python-unidecode))
+ (list python-black python-sphinx-5 python-unidecode
+ (package/inherit python-sphinx-rtd-theme
+ (propagated-inputs
+ (modify-inputs
+ (package-propagated-inputs python-sphinx-rtd-theme)
+ (replace "python-sphinx" python-sphinx-5))))))
(home-page "https://github.com/josiah-wolf-oberholtzer/uqbar")
(synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX")
(description
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 75/92] gnu: python-typeguard-4: Ignore failing tests.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-75-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-typeguard-4)
[arguments]<#:test-flags>: Ignore failing tests.

Change-Id: I0e23eb81cab942c9838d9561268f51b57a461d89
---
gnu/packages/python-xyz.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)

Toggle diff (15 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9639b1027b5..f145f19964c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -26669,7 +26669,7 @@ (define-public python-typeguard-4
(base32 "11yrc7pv2fajmicwiyc92sb5gphlw3zbxww8f2prrsh6rgdv6kqr"))))
(build-system pyproject-build-system)
(arguments
- '())
+ (list #:test-flags '(list "--ignore=tests/mypy")))
(propagated-inputs (list python-typing-extensions))
(native-inputs (modify-inputs (package-native-inputs python-typeguard)
(append python-setuptools python-wheel)))))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 77/92] gnu: python-funsor: Ignore flaky test.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-77-ngraves@ngraves.fr
* gnu/packages/machine-learning.scm (python-funsor)
[arguments]<#:test-flags>: Ignore flaky test.

Change-Id: I6b86c6478c89833609b2ac5821b5509acf589fa6
---
gnu/packages/machine-learning.scm | 2 ++
1 file changed, 2 insertions(+)

Toggle diff (15 lines)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index ddf8bedf047..21d58d9aae9 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -170,6 +170,8 @@ (define-public python-funsor
(sha256
(base32 "0cgysij0dix0fikyz2x4f8jvaskm5s5a04s07chzaz2dw1fpxdq8"))))
(build-system pyproject-build-system)
+ (arguments ; disable flaky test
+ (list #:test-flags '(list "-k" "not test_integrate_variable[x23-i]")))
(propagated-inputs (list python-makefun python-multipledispatch
python-numpy python-opt-einsum
python-typing-extensions))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 78/92] gnu: borgmatic: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-78-ngraves@ngraves.fr
* gnu/packages/backup.scm (borgmatic):
[build-system]: Move to pyproject-build-system.
[arguments]: Migrate 'check phase replacement to <#:test-flags>.

Change-Id: I916e87f10c75718c4e840d97eaa78623ed2a4fd3
---
gnu/packages/backup.scm | 14 ++++----------
1 file changed, 4 insertions(+), 10 deletions(-)

Toggle diff (48 lines)
diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm
index 5e74439bffc..663eb2568fe 100644
--- a/gnu/packages/backup.scm
+++ b/gnu/packages/backup.scm
@@ -24,6 +24,7 @@
;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2022 Feng Shu <tumashu@163.com>
;;; Copyright © 2023 Timo Wilken <guix@twilken.net>
+;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -46,6 +47,7 @@ (define-module (gnu packages backup)
#:use-module (guix build-system gnu)
#:use-module (guix build-system go)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix build-system qt)
#:use-module (guix download)
#:use-module (guix gexp)
@@ -1332,7 +1334,7 @@ (define-public borgmatic
(uri (pypi-uri "borgmatic" version))
(sha256
(base32 "1xmqv0gg2ic7lp5kmygr9f6qkabsr86mma7pigan12vk2bcdbw31"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
#:phases #~(modify-phases %standard-phases
@@ -1348,15 +1350,7 @@ (define-public borgmatic
(("(module.get_local_path.+ == )'borg'" all start)
(string-append start "'"
(search-input-file inputs "bin/borg")
- "'")))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Tests require the installed executable.
- (setenv "PATH"
- (string-append #$output "/bin" ":"
- (getenv "PATH")))
- (invoke "pytest")))))))
+ "'"))))))))
(inputs (list borg
python-apprise
python-colorama
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 80/92] gnu: python-pytest-trio: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-80-ngraves@ngraves.fr
* gnu/packages/python-check.scm (python-pytest-trio):
[build-system]: Move to pyproject-build-system.
[arguments]: Move from <#:phases> to <#test-flags>.

Change-Id: I7653110fc299d0757f7e01c2c1c29d599cb206bf
---
gnu/packages/python-check.scm | 25 ++++++++++---------------
1 file changed, 10 insertions(+), 15 deletions(-)

Toggle diff (39 lines)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index ccda2042fb6..46c8b3414e4 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -1186,22 +1186,17 @@ (define-public python-pytest-trio
(uri (pypi-uri "pytest-trio" version))
(sha256
(base32 "0c8cqf9by2884riksrqymqfp2g1d2d798a2zalcw9hmf34c786y0"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? inputs outputs #:allow-other-keys)
- (when tests?
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest" "-W" "error" "-ra" "-v" "--pyargs"
- "pytest_trio" "--verbose" "--cov" "-k"
- (string-append
- ;; Needs network
- "not test_async_yield_fixture_with_nursery"
- " and not test_try"
- ;; No keyboard interrupt in our build environment.
- " and not test_actual_test"))))))))
+ (list
+ #:test-flags '(list "-W" "error" "-ra" "-v" "--pyargs"
+ "pytest_trio" "--verbose" "--cov" "-k"
+ (string-append
+ ;; Needs network
+ "not test_async_yield_fixture_with_nursery"
+ " and not test_try"
+ ;; No keyboard interrupt in our build environment.
+ " and not test_actual_test"))))
(native-inputs
(list python-hypothesis python-pytest python-pytest-cov))
(propagated-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 82/92] gnu: python-pyan3: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-82-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-pyan3):
[build-system]: Move to pyproject-build-system.
[arguments]: Remove uneeded field.

Change-Id: I9f9f15ffd5a97666a410af56f02b573b55e45351
---
gnu/packages/python-xyz.scm | 12 +-----------
1 file changed, 1 insertion(+), 11 deletions(-)

Toggle diff (25 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f145f19964c..61a517f72a6 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -34000,17 +34000,7 @@ (define-public python-pyan3
"1367x25rcy2y8f0x9c2dbxl2qgdln3arr7ddyzybz2c28g6jrv5z"))
(patches (search-patches "python-pyan3-fix-positional-arguments.patch"
"python-pyan3-fix-absolute-path-bug.patch"))))
- (build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Extend PYTHONPATH so the built package will be found.
- (setenv "GUIX_PYTHONPATH"
- (string-append (getcwd) ":" (getenv "GUIX_PYTHONPATH")))
- (invoke "pytest")))))))
+ (build-system pyproject-build-system)
(native-inputs
(list python-pytest python-pytest-cov python-wheel))
(propagated-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 81/92] gnu: python-fenics-dijitso: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-81-ngraves@ngraves.fr
* gnu/packages/simulation.scm (python-fenics-dijitso):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Rewrite check phase replacement to care about
.guix-pytest.

Change-Id: I3383f4078fbb0100e6d8257d7d84785b953ab0cf
---
gnu/packages/simulation.scm | 19 ++++++++++---------
1 file changed, 10 insertions(+), 9 deletions(-)

Toggle diff (40 lines)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index d5fc1e3d176..ed029efeac1 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -573,7 +573,7 @@ (define-public python-fenics-dijitso
(sha256
(base32
"0lhqsq8ypdak0ahr2jnyvg07yrqp6wicjxi6k56zx24wp3qg60sc"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(inputs
(list openmpi python-numpy))
(native-inputs
@@ -586,15 +586,16 @@ (define-public python-fenics-dijitso
(add-after 'build 'mpi-setup
,%openmpi-setup)
(replace 'check
- (lambda _
+ (lambda* (#:key inputs #:allow-other-keys)
(setenv "HOME" "/tmp")
- (with-directory-excursion "test"
- ;; Disable parallel tests to avoid race condition. See
- ;; https://github.com/pytest-dev/pytest-cov/issues/237.
- (substitute* "runtests.sh"
- (("for p in 1 4 8 16; do")
- "for p in 1; do"))
- (invoke "./runtests.sh")))))))
+ (with-guix-pytest-plugin inputs
+ (with-directory-excursion "test"
+ ;; Disable parallel tests to avoid race condition. See
+ ;; https://github.com/pytest-dev/pytest-cov/issues/237.
+ (substitute* "runtests.sh"
+ (("for p in 1 4 8 16; do")
+ "for p in 1; do"))
+ (invoke "./runtests.sh"))))))))
(home-page "https://bitbucket.org/fenics-project/dijitso/")
(synopsis "Distributed just-in-time building of shared libraries")
(description
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 83/92] gnu: python-numpydoc: Move to pyproject-build-sytem.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-83-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-numpydoc):
[build-system]: Move to pyproject-build-sytem.
[arguments]: Move <#:phases> check replacement to
<#:test-flags>.

Change-Id: Ia7a812c4ee2adcd31fc32db1caa7c163cadf46bf
---
gnu/packages/python-xyz.scm | 14 +++++---------
1 file changed, 5 insertions(+), 9 deletions(-)

Toggle diff (28 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 61a517f72a6..5ec54c839b1 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9182,16 +9182,12 @@ (define-public python-numpydoc
(sha256
(base32
"0k2z3g4s3w39h1nd293542hl9qv55j29gcr3bkia0rr3ldsppnxh"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-v" "numpydoc/tests"
- ;; TODO: unclear why these fail.
- "-k" "not test_MyClass and not test_my_function")))))))
+ (list #:test-flags
+ '(list "numpydoc/tests"
+ ;; TODO: unclear why these fail.
+ "-k" "not test_MyClass and not test_my_function")))
(propagated-inputs (list python-jinja2 python-sphinx))
(native-inputs (list python-matplotlib python-pytest python-pytest-cov))
(home-page "https://pypi.org/project/numpydoc/")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 84/92] gnu: python-multidict: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-84-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-multidict):
[build-system]: Move to pyproject-build-system.
[arguments] Remove undeed field.

Change-Id: I916b36e6c4ac25dfc32b5813ad67cf4e6c134d36
---
gnu/packages/python-xyz.scm | 9 +--------
1 file changed, 1 insertion(+), 8 deletions(-)

Toggle diff (22 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5ec54c839b1..7b99a84b48e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9905,14 +9905,7 @@ (define-public python-multidict
(sha256
(base32
"1kjrxav572j45xvr1iy60zb2g8zqvrinzdkl4ax36js4vczckl8d"))))
- (build-system python-build-system)
- (arguments
- '(#:phases (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (invoke "pytest" "-vv")
- (format #t "test suite not run~%")))))))
+ (build-system pyproject-build-system)
(native-inputs
(list python-pytest python-pytest-cov))
(home-page "https://github.com/aio-libs/multidict/")
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 86/92] gnu: python-certauth: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-86-ngraves@ngraves.fr
* gnu/packages/python-crypto.scm (python-certauth):
[build-system]: Move to pyproject-build-system.

Change-Id: If455ef00ff35164c2db401267162025b2ff9c6c2
---
gnu/packages/python-crypto.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)

Toggle diff (15 lines)
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index 4a9883a8e3d..7aaa37d7965 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -443,7 +443,7 @@ (define-public python-certauth
(sha256
(base32
"1yxqfb5131wahjyw9pxz03bq476rcfx62s6k53xx4cqbzzgdaqkq"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list #:phases
#~(modify-phases %standard-phases
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 85/92] gnu: python-warcio: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-85-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-warcio):
[build-system]: Move to pyproject-build-system.
[arguments]: Use <#:test-flags> instead of check phase replacement.

Change-Id: I7fd1ad51cddcbeb42c6aeeda552eb1a7bcd6e712
---
gnu/packages/python-web.scm | 26 ++++++++++----------------
1 file changed, 10 insertions(+), 16 deletions(-)

Toggle diff (41 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index c24a3daa2e1..5f07b3cfc50 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -6631,24 +6631,18 @@ (define-public python-warcio
(sha256
(base32
"11afr6zy3r6rda81010iq496dazg4xid0izg3smg6ighpmvsnzf2"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv"
- ;; These tests fail due to networking requirements.
- "-k" (format #f "not ~a"
- (string-join
- '("test_post_chunked"
- "test_remote"
- "test_capture_http_proxy"
- "test_capture_https_proxy"
- "test_capture_https_proxy_same_session")
- " and not ")))))))))
+ #:test-flags ; These tests fail due to networking requirements.
+ '(list "-k" (format #f "not ~a"
+ (string-join
+ '("test_post_chunked"
+ "test_remote"
+ "test_capture_http_proxy"
+ "test_capture_https_proxy"
+ "test_capture_https_proxy_same_session")
+ " and not ")))))
(native-inputs
;; These inputs are required for the test suite.
(list python-httpbin python-pytest-cov python-requests
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 87/92] gnu: python-matplotlib: Ignore failing tests.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-87-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-matplotlib)
[arguments]<#:test-flags>: Ignore failing tests.

Change-Id: I3ecb9e6331f17a9333e27daab8fa9d6c3c408aea
---
gnu/packages/python-xyz.scm | 1 +
1 file changed, 1 insertion(+)

Toggle diff (14 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7b99a84b48e..90d43de60c1 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9335,6 +9335,7 @@ (define-public python-matplotlib
(string-append
;; This one fails with a small difference in the upper left.
"not test_figure_legend_outside"
+ " and not test_warn_big_data_best_loc"
;; The 'test_lazy_auto_backend_selection' fails
;; because it would require an X server; skip it.
" and not test_lazy_auto_backend_selection"))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 79/92] gnu: tuir: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-79-ngraves@ngraves.fr
* gnu/packages/syndication.scm (tuir):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Replace 'check phase replacement.
<#:test-flags>: Ignore failing test.

Change-Id: If88f6c42769b096871bdd73af67d71930e39e399
---
gnu/packages/syndication.scm | 17 ++++++++---------
1 file changed, 8 insertions(+), 9 deletions(-)

Toggle diff (45 lines)
diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm
index 18d3df5b6ee..d986e049ccf 100644
--- a/gnu/packages/syndication.scm
+++ b/gnu/packages/syndication.scm
@@ -33,6 +33,7 @@ (define-module (gnu packages syndication)
#:use-module (guix build-system glib-or-gtk)
#:use-module (guix build-system gnu)
#:use-module (guix build-system meson)
+ #:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
#:use-module (gnu packages)
#:use-module (gnu packages autotools)
@@ -55,6 +56,7 @@ (define-module (gnu packages syndication)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages python-web)
@@ -456,16 +458,13 @@ (define-public tuir
(sha256
(base32
"06xb030ibphbrz4nsxm8mh3g60ld8xfp6kc3j6vi1k4ls5s4h79i"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (delete 'sanity-check) ; Tries to read environment variables.
- (replace 'check
- (lambda* (#:key tests? inputs outputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (when tests?
- (invoke "pytest")))))))
+ (list #:test-flags
+ '(list "-k" "not test_content_humanize_timestamp")
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'sanity-check)))) ; Reads environment variables.
(inputs
(list python-beautifulsoup4 python-decorator python-kitchen
python-requests python-six))
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 89/92] gnu: python-qemu-qmp: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-89-ngraves@ngraves.fr
* gnu/packages/virtualization.scm (python-qemu-qmp):
[build-system]: Move to pyproject-build-system.

Change-Id: I4a11e7c913092a4798b46347388a0f07bbb85213
---
gnu/packages/virtualization.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)

Toggle diff (15 lines)
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index 0b46281050d..5f1148b7430 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -2016,7 +2016,7 @@ (define-public python-qemu-qmp
(uri (pypi-uri "qemu.qmp" version))
(sha256
(base32 "1rpsbiwvngij6fjcc5cx1azcc4dxmm080crr31wc7jrm7i61p7c2"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
#:phases
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 90/92] gnu: python-cssselect2: Move to pyproject-build-system.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-90-ngraves@ngraves.fr
* gnu/packages/python-web.scm (python-cssselect2):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Remove uneeded 'check phase replacement.

Change-Id: I0bdcf546d24bd738d5c547c36faa91483408d1ab
---
gnu/packages/python-web.scm | 8 ++------
1 file changed, 2 insertions(+), 6 deletions(-)

Toggle diff (28 lines)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 5f07b3cfc50..05413fd2e7e 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -5930,7 +5930,7 @@ (define-public python-cssselect2
(uri (pypi-uri "cssselect2" version))
(sha256
(base32 "1j2fcr217rsvkipsg6zjq03rl64rxnvb5hqqpx0dv58fhspvkywk"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -5941,11 +5941,7 @@ (define-public python-cssselect2
(("'pytest-flake8',") "")
(("'pytest-isort',") "")
(("--flake8") "")
- (("--isort") ""))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (lambda _ (invoke "pytest"))))))))
+ (("--isort") "")))))))
(propagated-inputs
(list python-tinycss2))
(native-inputs
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 88/92] gnu: python-qemu-qmp: Improve package style.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-88-ngraves@ngraves.fr
* gnu/packages/virtualization.scm (python-qemu-qmp):
[arguments]<#:phases>: Rewrite check phase replacement to only run
tests/protocol.py and not quality-checks.

Change-Id: I3485e2ee10d46b1699674f506876e7c185674653
---
gnu/packages/virtualization.scm | 12 +++++-------
1 file changed, 5 insertions(+), 7 deletions(-)

Toggle diff (25 lines)
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index c886c7489a7..0b46281050d 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -2023,13 +2023,11 @@ (define-public python-qemu-qmp
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; The Avocado test runner insists on writing stuff to HOME.
- (setenv "HOME" "/tmp")
- ;; The mypy tests fail (see:
- ;; https://gitlab.com/jsnow/qemu.qmp/-/issues/1).
- (delete-file "tests/mypy.sh")
- (invoke "avocado" "--show=all" "run" "tests")))))))
+ (if tests?
+ (begin ; avocado insists on writing stuff to HOME.
+ (setenv "HOME" "/tmp")
+ (invoke "avocado" "--show=all" "run" "tests/protocol.py"))
+ (format #t "test suite not run~%")))))))
(native-inputs
(list python-avocado-framework
python-setuptools-scm
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 91/92] gnu: python-notebook: Add python-jupyter-server native-input.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-91-ngraves@ngraves.fr
* gnu/packages/python-xyz.scm (python-notebook):
[native-inputs]: Add python-jupyter-server.

Change-Id: I742712482982e33f997af31b6936633d568b0e29
---
gnu/packages/python-xyz.scm | 1 +
1 file changed, 1 insertion(+)

Toggle diff (14 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 90d43de60c1..614ff9b23c3 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -17602,6 +17602,7 @@ (define-public python-notebook
python-traitlets))
(native-inputs
(list python-coverage
+ python-jupyter-server
python-nbval
python-pytest
python-pytest-cov
--
2.41.0
N
N
Nicolas Graves wrote on 10 May 00:54 +0200
[PATCH 92/92] build-system/pyproject: Add missing native-inputs.
(address . 70855@debbugs.gnu.org)(address . ngraves@ngraves.fr)
20240509225530.24649-92-ngraves@ngraves.fr
* gnu/packages/astronomy.scm (python-drms, python-spherical-geometry,
python-asdf-coordinates-schemacs, python-asdf-wcs-schemas, python-rad)
[native-inputs]: Add python-setuptools and python-wheel.
(python-casa-formats-io, python-tweakwcs)[native-inputs]: Add
python-setuptools.

* gnu/packages/bioinformatics.scm (python-ega-download-client)
[native-inputs]: Add python-setuptools and python-wheel.

* gnu/packages/databases.scm (datasette)[native-inputs]: Add
python-pip.

* gnu/packages/django.scm (python-django-localflavor,
python-django-contact-form)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]:
Add python-wheel.
(python-nbstripout)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/machine-learning.scm (python-captum,
python-linear-operator, python-gpytorch)[native-inputs]: Add
python-setuptools.

* gnu/packages/music.scm (abjad, abjad-ext-rmarkers,
abjed-ext-nauert, python-mutagen)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/package-management.scm
(python-conda-package-handling)[native-inputs]: Add python-setuptools
and python-wheel.
(conda)[native-inputs]: Add python-wheel.

* gnu/packages/python-check.scm (python-pyinstrument,
python-pytest-testmon, python-pytest-trio, python-nbval,
python-pytest-toolbox)[native-inputs]: Add python-setuptools and
python-wheel.
(python-nptyping)[native-inputs]: Add python-setuptools.

* gnu/packages/python-check.scm (python-dask-expr)[native-inputs]:
Add python-setuptools and python-wheel.

* gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper,
python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream,
python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes,
python-sparse, python-shtab, python-pyan3)[native-inputs]: Add
python-setuptools.
(python-jupytext, python-orderedmultidict, python-ukkonen,
python-identify, python-nodeenv, python-cfgv, python-zarr,
python-multipart, python-nbconvert, python-cram, python-immutables,
python-numpydoc, python-cairosvg, python-unidecode, python-black,
python-multidict, python-mpv-jsonipc, python-humanize,
python-cmd2)[native-inputs]: Add python-setuptools and python-wheel.
(python-partd, python-dask, python-zarr)[native-inputs]: Add
python-wheel.
(python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove
duplicate textlive-jknapltx.
(python-isort)[native-inputs]: Add python-pip.

* gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]:
Add python-setuptools and python-wheel.

* gnu/packages/sphinx.scm (python-pydata-sphinx-theme,
python-sphinx-autodoc-typehints)[native-inputs]: Add
python-setuptools.

* gnu/packages/syndication.scm (tuir)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/terminals.scm (python-halo)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/time.scm (python-arrow, python-dateutil)
[native-inputs]: Add python-setuptools and python-wheel.

* gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/virtualization.scm (python-qemu-qmp,
python-transient)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0
---
gnu/packages/astronomy.scm | 25 +++++++----
gnu/packages/bioinformatics.scm | 9 +++-
gnu/packages/databases.scm | 1 +
gnu/packages/django.scm | 2 +
gnu/packages/graphviz.scm | 4 +-
gnu/packages/jupyter.scm | 7 +++-
gnu/packages/machine-learning.scm | 4 +-
gnu/packages/music.scm | 10 ++---
gnu/packages/package-management.scm | 12 ++++--
gnu/packages/python-check.scm | 17 +++++---
gnu/packages/python-science.scm | 4 +-
gnu/packages/python-web.scm | 46 +++++++++++++++------
gnu/packages/python-xyz.scm | 64 +++++++++++++++++++----------
gnu/packages/simulation.scm | 2 +-
gnu/packages/sphinx.scm | 4 +-
gnu/packages/syndication.scm | 4 +-
gnu/packages/terminals.scm | 2 +-
gnu/packages/time.scm | 10 +++--
gnu/packages/version-control.scm | 2 +
gnu/packages/virtualization.scm | 9 ++--
gnu/packages/xorg.scm | 4 +-
21 files changed, 169 insertions(+), 73 deletions(-)

Toggle diff (362 lines)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index de5193d9b83..32c6f30e8f6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2041,7 +2041,8 @@ (define-public python-casa-formats-io
(lambda _
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-openfiles))
+ (list python-pytest python-pytest-cov python-pytest-openfiles
+ python-setuptools))
(propagated-inputs
(list python-astropy python-click python-dask python-numpy))
(home-page "https://casa-formats-io.readthedocs.io/")
@@ -2254,9 +2255,11 @@ (define-public python-drms
(build-system pyproject-build-system)
(native-inputs
(list python-astropy
- python-pytest-astropy
python-pytest
- python-setuptools-scm))
+ python-pytest-astropy
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs (list python-numpy python-pandas))
(home-page "https://sunpy.org")
(synopsis "Access astronomical HMI, AIA and MDI data with Python")
@@ -3230,7 +3233,9 @@ (define-public python-spherical-geometry
(native-inputs
(list python-pytest
python-pytest-astropy-header
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(inputs
(list qd))
(propagated-inputs
@@ -4607,6 +4612,7 @@ (define-public python-tweakwcs
python-pytest
python-pytest-cov
python-scipy
+ python-setuptools
python-setuptools-scm))
(home-page "https://tweakwcs.readthedocs.io/en/latest/")
(synopsis
@@ -4800,7 +4806,9 @@ (define python-asdf-coordinates-schemas
(native-inputs
(list python-pytest
python-pytest-xdist
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-asdf))
(home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
@@ -4986,7 +4994,9 @@ (define python-asdf-wcs-schemas
(list python-asdf
python-pytest
python-pytest-openfiles
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-asdf-coordinates-schemas
python-asdf-standard
@@ -5053,7 +5063,8 @@ (define-public python-rad
;; python-rad -> python-roman-datamodels -> python-crds -> python-rad
#:test-flags #~(list "--ignore=tests/test_schemas.py")))
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools
+ python-setuptools-scm python-wheel))
(propagated-inputs (list python-asdf python-asdf-astropy))
(home-page "https://github.com/spacetelescope/rad")
(synopsis "Roman Attribute Dictionary")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 47cca108658..a611caf715a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2771,8 +2771,13 @@ (define-public python-ega-download-client
(("==") ">=")))))))
(propagated-inputs (list python-htsget python-psutil python-requests
python-tqdm python-urllib3))
- (native-inputs (list python-coverage python-pytest python-pyfakefs
- python-responses python-mock))
+ (native-inputs (list python-coverage
+ python-mock
+ python-pyfakefs
+ python-pytest
+ python-responses
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/EGA-archive/ega-download-client")
(synopsis "EGA download client")
(description "PyEGA3 is a tool for viewing and downloading files from
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index a3a550c40c3..67e6ced7c32 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -5571,6 +5571,7 @@ (define-public datasette
(list python-beautifulsoup4
python-black
python-cogapp
+ python-pip
python-pytest
python-pytest-asyncio
python-pytest-runner
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 21099f0ff0f..4a271eaf0b5 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -294,6 +294,8 @@ (define-public python-django-localflavor
(if tests?
(apply invoke "python" "-m" "django" "test" test-flags)
(format #t "test suite not run~%")))))))
+ (native-inputs
+ (list python-setuptools python-wheel))
(propagated-inputs
(list python-django python-stdnum))
(home-page "https://django-localflavor.readthedocs.io/en/latest/")
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index 2c23b6abd5c..db40b99928a 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -221,7 +221,9 @@ (define-public python-uqbar
python-isort
python-mypy
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-black python-sphinx-5 python-unidecode
(package/inherit python-sphinx-rtd-theme
diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm
index cf3fa509966..e2bef079ba0 100644
--- a/gnu/packages/jupyter.scm
+++ b/gnu/packages/jupyter.scm
@@ -409,7 +409,8 @@ (define-public python-jupyterlab-server
python-requests-mock
python-ruamel.yaml
python-strict-rfc3339
- python-werkzeug))
+ python-werkzeug
+ python-wheel))
(home-page "https://jupyter.org")
(synopsis "Server components for JupyterLab applications")
(description "JupyterLab Server sits between JupyterLab and Jupyter
@@ -819,7 +820,9 @@ (define-public python-nbstripout
(list python-pytest
python-pytest-cram
python-pytest-flake8
- python-pytest-runner))
+ python-pytest-runner
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/kynan/nbstripout")
(synopsis "Strips outputs from Jupyter and IPython notebooks")
(description
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 21d58d9aae9..ba6f51b3f11 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -4535,7 +4535,7 @@ (define-public python-captum
python-parameterized
python-pytest
python-pytest-cov
- python-scikit-learn))
+ python-setuptools))
(home-page "https://captum.ai")
(synopsis "Model interpretability for PyTorch")
(description "Captum is a model interpretability and understanding library
@@ -5114,6 +5114,7 @@ (define-public python-linear-operator
(native-inputs (list python-flake8
python-flake8-print
python-pytest
+ python-setuptools
python-setuptools-scm
python-twine))
(home-page "https://github.com/cornellius-gp/linear_operator/")
@@ -5146,6 +5147,7 @@ (define-public python-gpytorch
python-flake8-print
python-nbval
python-pytest
+ python-setuptools
python-twine))
(home-page "https://gpytorch.ai")
(synopsis "Implementation of Gaussian Processes in PyTorch")
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 37fe94b56de..6b765dcb3d6 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1698,7 +1698,7 @@ (define-public abjad
(inputs
(list lilypond))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-quicktions
python-ply
@@ -1730,7 +1730,7 @@ (define-public abjad-ext-rmakers
(base32 "1y8s55b4mlsigm0xkk6qjpp08c75rv0swvjp0lj3cs6lgqdjxdjl"))))
(build-system pyproject-build-system)
(native-inputs
- (list lilypond python-pytest))
+ (list lilypond python-pytest python-setuptools python-wheel))
(propagated-inputs
(list abjad))
(home-page "https://abjad.github.io")
@@ -1755,7 +1755,7 @@ (define-public abjad-ext-nauert
(base32 "0j4pf4h27jm3df0dn2rwkdx6zqcxvr7pqchbaa9rffz7q4hbakmf"))))
(build-system pyproject-build-system)
(native-inputs
- (list lilypond python-pytest))
+ (list lilypond python-pytest python-setuptools python-wheel))
(propagated-inputs
(list abjad))
(home-page "https://abjad.github.io")
@@ -3978,8 +3978,8 @@ (define-public python-mutagen
(("( +)@given" all spaces)
(string-append spaces "@settings(deadline=None)\n" all))))))))
(native-inputs
- (list python-pytest python-hypothesis python-flake8))
- (home-page "https://mutagen.readthedocs.io/")
+ (list python-pytest python-hypothesis python-flake8
+ python-setuptools python-wheel))
(synopsis "Read and write audio tags")
(description "Mutagen is a Python module to handle audio metadata. It
supports ASF, FLAC, M4A, Monkey’s Audio, MP3, Musepack, Ogg FLAC, Ogg Speex, Ogg
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 949c42e274b..feed16ebcef 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1143,8 +1143,13 @@ (define-public python-conda-package-handling
(inputs
(list libarchive))
(native-inputs
- (list python-cython python-pytest python-pytest-cov
- python-pytest-mock python-mock))
+ (list python-cython
+ python-mock
+ python-pytest
+ python-pytest-cov
+ python-pytest-mock
+ python-setuptools
+ python-wheel))
(home-page "https://conda.io")
(synopsis "Create and extract conda packages of various formats")
(description
@@ -1284,7 +1289,8 @@ (define-public conda
(list python-coverage
python-flaky
python-pytest-timeout
- python-pytest-xprocess))
+ python-pytest-xprocess
+ python-wheel))
(home-page "https://github.com/conda/conda")
(synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
(description
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 46c8b3414e4..5571cee2088 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -377,7 +377,9 @@ (define-public python-pyinstrument
python-greenlet
python-pytest
python-pytest-asyncio
- python-pytest-trio))
+ python-pytest-trio
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/joerick/pyinstrument")
(synopsis "Call stack profiler for Python")
(description
@@ -1169,7 +1171,8 @@ (define-public python-pytest-testmon
(base32 "01qhbkb3n8c5c4id94w6b06q9wb7b6a33mqwyrkdfzk5pzv1gcyd"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
- (native-inputs (list python-coverage python-pytest))
+ (native-inputs (list python-coverage python-pytest
+ python-setuptools python-wheel))
(home-page "https://github.com/tarpas/pytest-testmon")
(synopsis "Selects tests affected by changed files and methods")
(description
@@ -1198,7 +1201,8 @@ (define-public python-pytest-trio
;; No keyboard interrupt in our build environment.
" and not test_actual_test"))))
(native-inputs
- (list python-hypothesis python-pytest python-pytest-cov))
+ (list python-hypothesis python-pytest python-pytest-cov
+ python-setuptools python-wheel))
(propagated-inputs
(list python-async-generator python-outcome python-pytest python-trio))
(home-page "https://github.com/python-trio/pytest-trio")
@@ -1487,7 +1491,8 @@ (define-public python-pytest-toolbox
(substitute* "setup.cfg"
((".*timeout.*") ""))))))))
(native-inputs
- (list python-pydantic python-pytest python-pytest-isort))
+ (list python-pydantic python-pytest python-pytest-isort
+ python-setuptools python-wheel))
(home-page "https://github.com/samuelcolvin/pytest-toolbox")
(synopsis "Numerous useful plugins for Pytest")
(description
@@ -1585,7 +1590,8 @@ (define-public python-nbval
(delete-file "tests/\
ipynb-test-samples/test-latex-pass-correctouput.ipynb"))))))
(native-inputs
- (list python-pytest python-pytest-cov python-sympy))
+ (list python-pytest python-pytest-cov python-setuptools python-sympy
+ python-wheel))
(propagated-inputs
(list python-ipykernel python-jupyter-client python-nbformat
python-six python-coverage))
@@ -2062,6 +2068,7 @@ (define-public python-nptyping
(native-inputs
(list python-beartype
python-mypy
+ python-setuptools
python-typeguard
python-wheel))
(propagated-inputs (list python-numpy python-typing-extensions))
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index dd4cffea8e1..f82feab0963 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2157,7 +2157,9 @@ (define-public python-dask-expr
;; package without creating a mutually recursive dependency.
(list python-dask/bootstrap
python-pytest
- python-versioneer))
+ python-setuptools
+ python-versioneer
+ python-wheel))
(home-page "https://github.com/dask/dask-expr")
(synopsis "Dask DataFrames with query optimization")
(description "This is a rewrite of Dask DataFrame that includes query
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 05413fd2e7e..61ea8a63558 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -684,10 +684,12 @@ (define-public python-aiostream
"0l2ijb7yk0820wiyf6zrzx8fhzf8925an7r06mcaw3in1mr6rssq"))))
(build-system python-build-system)
(native-inputs
- (list python-pytest
+ (list python-setuptools
+ python-pytest
python-pytest-asyncio
python-pytest-cov
- python-pytest-runner))
+ python-pytest-runner
+ python-wheel))
(home-page "https://github.com/vxgmichel/aiostream")
(synopsis "Generator-based operators for asynchronous iteration")
(description "@
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N
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Nicolas Goaziou wrote on 23 May 23:17 +0200
Re: [bug#70855] [PATCH 00/92] python-team patches
(name . Nicolas Graves)(address . ngraves@ngraves.fr)(address . 70855-done@debbugs.gnu.org)
874jao9qii.fsf@nicolasgoaziou.fr
Hello,

Nicolas Graves <ngraves@ngraves.fr> writes:

Toggle quote (4 lines)
> This patch series contains prerequisite patches for an upcoming series
> to remove unwanted python nativeinputs. It should go to the
> python-team branch, and contains various types of fixes or updates.

Thanks. I pushed all of this into python-team branch.

Regards,
--
Nicolas Goaziou
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