nafkhamdc wrote 10 months ago
(address . guix-patches@gnu.org)(name . nafkhamdc)(address . navid.afkhami@mdc-berlin.de)
e1d0a4e94c61abfc61fa8b6485c6cca609d6e2e2.1714727972.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-memes): New variable.
Change-Id: Ibdf5173d35ef81d27da6831148e66be83f856deb
---
gnu/packages/bioconductor.scm | 47 +++++++++++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
Toggle diff (62 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0fca094977..5029afbefa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2092,6 +2092,53 @@ (define-public r-macrophage
in Nature Genetics, January 2018.")
(license license:gpl2+)))
+(define-public r-memes
+ (let ((commit "55f0df1fe65c8ead5252542fdc0da0ff2339049e")
+ (revision "1"))
+ (package
+ (name "r-memes")
+ (version (git-version "1.11.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/snystrom/memes")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0mp3a610v293prmyid3w1w8fkjkppjnim60h7p9vz2884d0wdvk4"))))
+ (properties `((upstream-name . "memes")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biostrings
+ r-cmdfun
+ r-dplyr
+ r-genomicranges
+ r-ggplot2
+ r-ggseqlogo
+ r-magrittr
+ r-matrixstats
+ r-patchwork
+ r-processx
+ r-purrr
+ r-readr
+ r-rlang
+ r-tibble
+ r-tidyr
+ r-universalmotif
+ r-usethis
+ r-xml2))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/snystrom/memes")
+ (synopsis
+ "Motif matching, comparison, and de novo discovery using the MEME Suite")
+ (description
+ "This package facilitates motif analysis using MEME Suite tools.
+Memes provides data aware utilities for using GRanges objects as
+entrypoints to motifanalysis, data structures for examining & editing
+motif lists, and novel data visualizations. Memes functions and data
+structures are amenable to both base R and tidyverse workflows.")
+ (license license:expat))))
+
(define-public r-methylclockdata
(package
(name "r-methylclockdata")
base-commit: aa9ac252206615713ab988d7068da9e14a9bccc0
--
2.34.1