nafkhamdc wrote 10 months ago
(address . guix-patches@gnu.org)(name . nafkhamdc)(address . navid.afkhami@mdc-berlin.de)
0c93cb41c25fe436646a1cb8db09d248fee5dc49.1714485972.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-archspec): New variable.
Change-Id: Icb15a681d7f339ab25cb0a91feeaacc6a3e8cd6a
---
gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
Toggle diff (65 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index aa6bce5591..437371bf89 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19504,6 +19504,56 @@ (define-public python-arboreto
tree-based ensemble regressors.")
(license license:bsd-3)))
+(define-public python-archspec
+ (package
+ (name "python-archspec")
+ (version "0.2.3")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/archspec/archspec")
+ (commit (string-append "v" version))
+ (recursive? #t)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "03yfn4b9xg41pd7vls2cils77wkkb9si1h2qqvnkds661fdankqj"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases '(modify-phases %standard-phases
+ ;; Numba needs a writable dir to cache functions.
+ (add-before 'build 'set-numba-cache-dir
+ (lambda _
+ (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
+ (propagated-inputs (list python-boltons
+ python-cooler
+ python-ctxcore
+ python-interlap
+ python-intervaltree
+ python-jsonschema
+ python-networkx
+ python-numba
+ python-poetry-core
+ pyscenic
+ python-scikit-learn
+ python-tables
+ python-typing-extensions))
+ (native-inputs (list python-black
+ python-flake8
+ python-isort
+ python-poetry-core
+ python-pylint
+ python-pytest
+ python-pytest-cov))
+ (home-page "https://github.com/archspec/archspec")
+ (synopsis "Library to query system architecture")
+ (description
+ "Archspec offers human-readable labels for system architecture aspects.
+These aspects include CPU, network fabrics, etc. In addition, it offers
+APIs to detect, query, and compare them.")
+ (license license:expat)))
+
(define-public pyscenic
;; Latest commit from the update-pyarrow branch
(let ((commit "5f170fdf474548c37ab381d1849c662820d658ee")
base-commit: df3d30819e650a490ef39dd6692740bb13263c75
--
2.34.1