[PATCH 00/49] gnu: Astronomy 2024/02 updates.

+++ b/gnu/packages/astronomy.scm

+ (version "0.3.2")

+ (base32 "1kybjlddrm8x4x5y82qczi6z1d2riv6zcfjzrh7pzg2vwj89izh0"))))

+++ b/gnu/packages/astronomy.scm

+ (version "3.10.3")

+ "077s9if7fmccvhsbp0dhvyqcil46vpbgdm1y6qn6h34r8lfqj9z6"))

+++ b/gnu/packages/python-compression.scm

+ (lambda _

+++ b/gnu/packages/python-compression.scm

+;;; Copyright © 2018-2020, 2022, 2023 Efraim Flashner <efraim@flashner.co.il>

+ #:use-module (gnu packages cmake)

+(define-public python-blosc

+ (package

+ (name "python-blosc")

+ (version "1.11.1")

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "blosc" version))

+ (sha256

+ (base32

+ "0xmjs28sgpnb940zrhw010dq2m9d8a5h4fgnjyk6645fgfr1j8f2"))

+ (snippet

+ #~(begin (use-modules (guix build utils))

+ (delete-file-recursively "blosc/c-blosc")))))

+ (build-system python-build-system)

+ (arguments

+ (list #:phases

+ #~(modify-phases %standard-phases

+ (add-after 'unpack 'find-blosc

+ (lambda* (#:key inputs #:allow-other-keys)

+ (setenv "USE_SYSTEM_BLOSC" "1")

+ (setenv "Blosc_ROOT" #$(this-package-input "c-blosc"))))

+ (replace 'check

+ (lambda* (#:key tests? #:allow-other-keys)

+ (when tests?

+ (invoke "python" "-m" "blosc.test")))))))

+ (propagated-inputs

+ (list python-scikit-build python-numpy))

+ (inputs (list c-blosc))

+ (native-inputs (list cmake-minimal))

+ (home-page "https://github.com/blosc/python-blosc")

+ (synopsis "Python wrapper for the Blosc data compressor library")

+ (description "Blosc is a high performance compressor optimized for binary

+data. It has been designed to transmit data to the processor cache faster

+than the traditional, non-compressed, direct memory fetch approach via a

+@code{memcpy()} system call.

+

+Blosc works well for compressing numerical arrays that contains data with

+relatively low entropy, like sparse data, time series, grids with

+regular-spaced values, etc.

+

+This Python package wraps the Blosc library.")

+ (license license:bsd-3)))

+

+++ b/gnu/packages/python-xyz.scm

+++ b/gnu/packages/python-check.scm

+ (version "1.2.0")

+ (base32 "0cmrkgpib869kpy8h8hfkg20w16lakkmbkw8cxdywpmf5wx7dbf5"))))

+ ;; Tests requiring network access.

+ " and not test_remote_data_ignore_warnings"

+ ;; Requiring git available.

+ " and not test_generate_diff_basic"))))

+ (home-page "https://github.com/scientific-python/pytest-doctestplus")

+++ b/gnu/packages/python-check.scm

+ (version "0.6.1")

+ (base32 "1pk7v96rkypx4ld59f6p8fh5bq371ka8g7bh4h7n4df91x2v2dr9"))))

+++ b/gnu/packages/python-check.scm

+ (build-system pyproject-build-system)

+ (list

+ #:test-flags

+ #~(list "-k" (string-append

+ ;; Disable tests requiring python-astropy, to break cycle.

+ "not test_succeeds_func_fits_hdu"

+ " and not test_fails"

+ " and not test_generate"

+ " and not test_default_format"))))

+ (list python-pytest python-setuptools-scm))

+++ b/gnu/packages/python-check.scm

+ (version "0.2.0")

+ (base32 "0mmgg2n8qk6s2kprycjl70lxcpm43dkapplmkf32i0ai6qdqyiiz"))))

+++ b/gnu/packages/python-xyz.scm

+ (version "2.17.1")

+ "0qb2wj60i7v1c95k6m0pskx20ss6dxrj3ym0d7z4c98jfah3ljsn"))))

+ (build-system pyproject-build-system)

+++ b/gnu/packages/python-xyz.scm

+ (list

+ #:test-flags

+ #~(list "-n" "auto")

+ #:phases

+ #~(modify-phases %standard-phases

+ (add-after 'unpack 'disable-service-tests

+ (lambda _

+ (setenv "ZARR_TEST_ABS" "0")

+ (setenv "ZARR_TEST_MONGO" "0")

+ (setenv "ZARR_TEST_REDIS" "0"))))))

+ (list python-asciitree

+ python-fasteners

+ python-numcodecs

+ (list python-fsspec

+ python-pytest

+ python-h5py

+ python-pytest-doctestplus

+ python-pytest-timeout

+ python-pytest-xdist

+ python-setuptools-scm))

+++ b/gnu/packages/python-xyz.scm

+ (build-system pyproject-build-system)

+++ b/gnu/packages/python-science.scm

+;;; Copyright © 2024 Sharlatan Hellseher <sharlatanus@gmail.com>

+ '(list "-n" "auto"

+ "-x" "-m"

+ " and not test_steal_twice"

+ " and not test_task_groups_update_start_stop"

+ " and not test_web_preload"

+ " and not test_web_preload_worker"))

+ (list python-flaky

+ python-importlib-metadata

+ python-pytest-xdist

+++ b/gnu/packages/python-xyz.scm

+ #~(list "-n" "auto"

+ "-m" "not gpu and not slow and not network"

+ python-pytest

+ python-pytest-rerunfailures

+ python-pytest-runner

+ python-pytest-xdist

+++ b/gnu/packages/astronomy.scm

+ #:test-flags

+ #~(list "-n" "auto"

+ ;; Disable tests requiring access to CRDS servers to download

+ ;; ~500MiB of data.

+ "-k" "not test_crds_selectors_vs_datamodel")

+ python-pytest-xdist

+++ b/gnu/packages/python-xyz.scm

+ #:test-flags

+ #~(list "-n" "auto")

+ (list python-pytest

+ python-pytest-xdist

+ python-scikit-image))

+++ b/gnu/packages/astronomy.scm

+ (version "5.0.0")

+ (base32 "1kydi6qqsscgsa55fa2za35vr5j8xjn09lfbnb5ajr8yxdgm4n3y"))))

+++ b/gnu/packages/astronomy.scm

+ (version "0.2024.3.18.0.29.47")

+ (base32 "1mf03iqw09rp6d8hbby33f4jwfjan9gkb1z7xqsjr2jpj7zwpn3y"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.2.6")

+ (base32 "1wxr35sqsdqzf85xyjh1v8hmwwiyv4cn0lr7q8l1kkngfywq5l2r"))))

+++ b/gnu/packages/astronomy.scm

+ (method git-fetch) ; no tests in PyPI release

+ (list #:phases

+++ b/gnu/packages/astronomy.scm

+ (version "0.2.0")

+ "0h24gvm1wip4gh3fw5ki8kwnvcy8gw6b6pajw3i1zvriamdw95fr"))))

+++ b/gnu/packages/astronomy.scm

+ (version "0.5.0")

+ (base32 "0as6dcf9dmxjh24gwdmqwbbrk56fhgsmzwi7af4llwvm4mw4rkw2"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.1.1")

+ "00k1fzc8y8j0ar1chq0nqyfw8bgkkjgrkm32ibn0kz2vn715nlq1"))))

+ (list

+ #:test-flags

+ ;; Remove tests requiring python-asdf where python-asdf requires

+ ;; python-asdf-standard, break circular dependencies.

+ #~(list "--ignore=tests/test_asdf_schema.py"

+ "--ignore=tests/test_integration.py"

+ "--ignore=tests/test_manifests.py"

+ "--ignore=tests/test_yaml_schema.py")))

+++ b/gnu/packages/astronomy.scm

+ (version "3.1.0")

+ (base32 "0fa6y3gmqc0y3nz0h68vq3a84pvx6gc5zp33wg8a4n9b4kipm464"))))

+ #~(list "-n" "auto" "-p" "no:legacypath")

+ #:phases

+ #~(modify-phases %standard-phases

+ ;; ImportError: Error importing plugin " no:legacypath": No module

+ ;; named ' no:legacypath'

+ (add-before 'check 'fix-tests-setup

+ (lambda _

+ (substitute* "pyproject.toml"

+ ((".*:legacypath.*") "")))))))

+++ b/gnu/packages/astronomy.scm

+ (version "0.3.0")

+ (base32 "0kk0rlzv0kkcw6fiwvps4n0x05867xc9hxyyzica31zcvhan12y9"))))

+++ b/gnu/packages/astronomy.scm

+ (version "0.4.0")

+ (base32 "1d08ng890xc1ilf3y1hrimx09x990wvg9g18n0ijwvpilnw49fy0"))))

+ (list python-asdf-coordinates-schemas

+ python-asdf-standard

+ python-asdf-transform-schemas))

+++ b/gnu/packages/astronomy.scm

+ (version "0.6.0")

+ (base32 "0cxwknkjkgiavwmsz3vzk88c3spdi1cj4kwp62hgj92g2mh5k0zh"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.5.1")

+ (base32 "0cm6agaf1gvc5bi95wx6a70ngj9vn95rx78fs59vlrmpww7q2807"))))

+++ b/gnu/packages/astronomy.scm

+ (version "0.4.7")

+ (base32 "1jbyfhqk74wsdjxzqi0hcrgc7ha4q8cyjx96nv6w9bjg1b5vlzq4"))))

+ "-m" "not remote_data"

+ ;; Some tests failed with parallel run, see

+ ;; <https://github.com/astropy/astroquery/issues/2968>.

+ ;; "-n" "auto"

+ "-k" (string-append

+ ;; Failed: DID NOT RAISE <class

+ ;; 'astropy.utils.exceptions.AstropyDeprecationWarning'>

+ "not test_raises_deprecation_warning"))

+ (replace 'check

+ (lambda* (#:key tests? test-flags #:allow-other-keys)

+ (when tests?

+ ;; Some tests require write access to $HOME.

+ (setenv "HOME" "/tmp")

+ ;; Step out of the source directory to avoid interference;

+ ;; we want to run the installed code with extensions etc.

+ (with-directory-excursion "/tmp"

+ (apply invoke "pytest" "-v" test-flags))))))))

+++ b/gnu/packages/astronomy.scm

+ (version "0.21.0")

+ (base32 "1fn5l4v236bl7xqi1is40c2q57dji8by98iwqcndfnmjwqf7zllc"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.15.1")

+ (base32 "14l3d3bx73r7cxhcl1cfh1q088qh5wq5pz5fs9dx7w79kp8mp6pg"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.13.0")

+ (base32 "0cfsigvsa0i7z2nq9ci9gxccp074kqsgr01xi2npk8xf7cjisrfq"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.6.1")

+ (base32 "1rwvzjpidz0sfp52mqgs25599hbvxyc4gdc1yk0kdm8aynhdwi82"))))

+++ b/gnu/packages/astronomy.scm

+ (add-before 'build 'silent-check-for-opencv

+ (lambda _

+ ;; XXX: Can't detect opencv-python version. The input opencv

+ ;; might not set the version correctly.

+ (substitute* "pyproject.toml"

+ ((".*opencv-python-headless.*") ""))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.10.0")

+ (base32 "00zc7z3f2fjvmms2h7176wnzjb025v0aasc6fiib9055sk34bc94"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.3.2")

+ "1kyd1r6zcs0jmh5gq74adrnb1h7dfr1mzjq4k4vbngfiga8gfd28"))))

+++ b/gnu/packages/astronomy.scm

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "suntime" version))

+ (sha256

+ (base32 "1kyd1r6zcs0jmh5gq74adrnb1h7dfr1mzjq4k4vbngfiga8gfd28"))))

+ (build-system pyproject-build-system)

+ (propagated-inputs

+ (list python-dateutil))

+ "Python library doing sunrise and sunset time calculation. Takes a

+WGS84 (GPS) latitude/longitude as input as well as an UTC or local datetime

+object.")

+++ b/gnu/packages/astronomy.scm

+ (version "0.5.0")

+ (base32 "0nw71a7i875lfwbwhpc80nvwalb7iq3fynfkbngx6f6jb3v10dgs"))))

+++ b/gnu/packages/python-xyz.scm

+ (version "0.12.9")

+ (base32 "0awyav7071nn9z2g4mmpg33y0y0nfandfr6nr3j5vyb8hnprcmns"))))

+++ b/gnu/packages/astronomy.scm

+ (version "11.17.19")

+ "1x48yw6jnz7dw0myc86ds0qaki6v1anqaihd5qzrxwrrl61kyp6x"))))

+++ b/gnu/packages/astronomy.scm

+ (version "1.6.0")

+ (base32 "00isg6nsqzgjqpkczwvrcmj3ndzav3bfzla0a72b44cgdj20wyv8"))

+ ;; See <https://github.com/pynbody/pynbody/issues/778>

+ "--ignore=tests/tipsy_test.py"

+ "-k"

+ (string-append

+ "not test_div_curl_smoothing"

+ " and not test_float_kd"

+ " and not test_kd_delete"

+ " and not test_kd_issue_88"

+ " and not test_kdtree_from_existing_kdtree"

+ " and not test_kdtree_shared_mem"

+ " and not test_neighbour_list"

+ " and not test_particles_in_sphere"

+ " and not test_periodic_smoothing"

+ " and not test_smooth"

+ " and not test_smooth_WendlandC2"))

+++ b/gnu/packages/astronomy.scm

+(define-public python-asdf-zarr

+ (package

+ (name "python-asdf-zarr")

+ (version "0.0.3")

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "asdf_zarr" version))

+ (sha256

+ (base32 "0ax7c9xarh6fi2yxm1z2p90mc3d57q23a7wc8av30xg8ririrl4s"))))

+ (build-system pyproject-build-system)

+ (propagated-inputs

+ (list python-asdf python-fsspec python-zarr))

+ (native-inputs

+ (list python-pytest python-semantic-version python-setuptools-scm))

+ (home-page "https://github.com/asdf-format/asdf-zarr")

+ (synopsis "Asdf extension to support Zarr arrays")

+ (description

+ "This package includes an extension for the Python library asdf to add

+support for reading and writing chunked

+@url{https://zarr.readthedocs.io/en/stable/,Zarr} arrays, a file storage

+format for chunked, compressed, N-dimensional arrays based on an open-source

+specification.")

+ (license license:bsd-3)))

+

+++ b/gnu/packages/astronomy.scm

+(define-public python-asdf-compression

+ ;; TODO: No release, change to tag when it's ready.

+ (let ((commit "57cc7e76fb4163be3e99fb740b36b5ec5ae96e49")

+ (revision "0"))

+ (package

+ (name "python-asdf-compression")

+ (version (git-version "0.0.1" revision commit))

+ (source

+ (origin

+ (method git-fetch)

+ (uri (git-reference

+ (url "https://github.com/asdf-format/asdf-compression")

+ (commit commit)))

+ (file-name (git-file-name name version))

+ (sha256

+ (base32 "1g6iiyls950k66dmd0pbqqdvz74kksc4j191n0ik6fhjnkiwifgs"))))

+ (build-system pyproject-build-system)

+ (arguments

+ (list

+ #:phases

+ #~(modify-phases %standard-phases

+ (add-before 'build 'set-version

+ (lambda _

+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))

+ (native-inputs

+ (list python-numpy

+ python-pytest

+ python-semantic-version

+ python-setuptools-scm))

+ (propagated-inputs

+ (list python-asdf

+ python-blosc

+ python-lz4

+ python-zstandard))

+ (home-page "https://github.com/asdf-format/asdf-fits-schemas")

+ (synopsis "ASDF extension to support various compression algorithms")

+ (description

+ "This package includes a plugin for the Python library ASDF to add

+support for reading and writing various compression algorithms including:

+@url{https://www.blosc.org/python-blosc/reference.html,Blosc},

+@url{https://python-lz4.readthedocs.io/en/stable/lz4.frame.html,LZ4 Frame},

+@url{http://facebook.github.io/zstd/,Zstandard}.")

+ (license license:bsd-3))))

+

+++ b/gnu/packages/astronomy.scm

+(define-public python-astroplan

+ (package

+ (name "python-astroplan")

+ (version "0.9.1")

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "astroplan" version))

+ (sha256

+ (base32 "0jrgii0f11ckxvywinr9kcsljxnpnkh7hv5638wxwcb1iyjmx36r"))))

+ (build-system pyproject-build-system)

+ (arguments

+ (list

+ #:test-flags

+ #~(list "astroplan/tests"

+ "-k" (string-append

+ ;; Test requiring newer python-pytz

+ "not test_timezone"

+ ;; Disable tests requiring remote data.

+ " and not test_FixedTarget_from_name"

+ " and not test_altitude_constraint"

+ " and not test_at_night_basic"

+ " and not test_caches_shapes"

+ " and not test_compare_airmass_constraint_and_observer"

+ " and not test_compare_altitude_constraint_and_observer"

+ " and not test_docs_example"

+ " and not test_eclipses"

+ " and not test_eq_observer"

+ " and not test_event_observable"

+ " and not test_galactic_plane_separation"

+ " and not test_get_skycoord"

+ " and not test_hash_observer"

+ " and not test_is_night"

+ " and not test_local_time_constraint_hawaii_tz"

+ " and not test_local_time_constraint_utc"

+ " and not test_moon_illumination"

+ " and not test_moon_separation"

+ " and not test_observability_table"

+ " and not test_observer_lon_lat_el"

+ " and not test_regression_airmass_141"

+ " and not test_regression_shapes"

+ " and not test_sun_separation"

+ " and not test_tonight")

+ "--ignore=astroplan/tests/test_scheduling.py")

+ #:phases

+ #~(modify-phases %standard-phases

+ (add-before 'check 'prepare-test-environment

+ (lambda _

+ (setenv "HOME" "/tmp")

+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))

+ (propagated-inputs

+ (list python-astropy

+ python-astroquery

+ python-matplotlib

+ python-numpy

+ python-pytz

+ python-six))

+ (native-inputs

+ (list python-pytest-astropy

+ python-pytest-mpl

+ python-setuptools-scm))

+ (home-page "https://github.com/astropy/astroplan")

+ (synopsis "Observation planning package for astronomers")

+ (description

+ "This package provides a flexible toolbox for observation planning and

+scheduling. When complete, the goal is to be easy for Python beginners and new

+observers to to pick up, but powerful enough for observatories preparing nightly

+and long-term schedules.

+

+Features:

+@itemize

+@item calculate rise/set/meridian transit times, alt/az positions for targets at

+observatories anywhere on Earth

+@item built-in plotting convenience functions for standard observation planning

+plots (airmass, parallactic angle, sky maps)

+@item determining observability of sets of targets given an arbitrary set of

+constraints (i.e., altitude, airmass, moon separation/illumination, etc.)

+@end itemize")

+ (license license:bsd-3)))

+

+++ b/gnu/packages/python-compression.scm

+(define-public python-ewah-bool-utils

+ (package

+ (name "python-ewah-bool-utils")

+ (version "1.1.0")

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "ewah_bool_utils" version))

+ (sha256

+ (base32 "11z9vv9m19370j762z100dqhy2ndjzkxk3w9z02lzwadbyibal3h"))))

+ (build-system pyproject-build-system)

+ (arguments

+ (list

+ #:phases

+ #~(modify-phases %standard-phases

+ (add-before 'check 'build-extensions

+ (lambda _

+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))

+ (native-inputs

+ (list python-cython python-pytest))

+ (propagated-inputs

+ (list python-numpy))

+ (home-page "https://github.com/yt-project/ewah_bool_utils")

+ (synopsis "EWAH Bool Array compression")

+ (description "This package provide a Python wrapper to @acronym{EWAH,

+ Enhanced Word-Aligned Hybrid} compression bitarray method.")

+ (license (list

+ ;; LICENSE: for Python code.

+ license:bsd-3

+ ;; XXX: Check if it's possible to have it as a dedicated package

+ ;; and link here..

+ ;; ewah_bool_utils/cpp/LICENSE: for C++ bundle, sourced from

+ ;; <https://github.com/lemire/EWAHBoolArray>.

+ license:asl2.0))))

+

+++ b/gnu/packages/check.scm

+;;; Copyright © 2022-2024 Sharlatan Hellseher <sharlatanus@gmail.com>

+(define-public python-nose-exclude

+ (package

+ (name "python-nose-exclude")

+ (version "0.5.0")

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "nose-exclude" version))

+ (sha256

+ (base32 "0123x1lyv5b2p9civcfg8vilj2ga3q7p2ks1hq25z0gb3ssai3zp"))))

+ (build-system pyproject-build-system)

+ (arguments

+ (list

+ #:phases

+ #~(modify-phases %standard-phases

+ (add-before 'check 'disable-test

+ (lambda _

+ ;; Disable failing test: AssertionError.

+ (substitute* '("test_dirs/build/test.py"

+ "test_dirs/test_not_me/test.py")

+ (("def test_i_should_never_run")

+ "def off_i_should_never_run")))))))

+ (propagated-inputs

+ (list python-nose))

+ (home-page "https://github.com/kgrandis/nose-exclude")

+ (synopsis "Exclude specific directories from nosetests runs")

+ (description

+ "@code{nose-exclude} is a Nose plugin that allows you to easily specify

+directories to be excluded from testing.")

+ (license license:lgpl2.1+)))

+

+++ b/gnu/packages/astronomy.scm

+(define-public python-cmyt

+ (package

+ (name "python-cmyt")

+ (version "2.0.0")

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "cmyt" version))

+ (sha256

+ (base32 "1zabmckr1z637pfqqvlkj0asfqqvx2x92163dby8x0c8yiqgdvjb"))))

+ (build-system pyproject-build-system)

+ (native-inputs

+ (list python-colorspacious python-pytest python-pytest-mpl))

+ (propagated-inputs

+ (list python-matplotlib python-numpy))

+ (home-page "https://yt-project.org/")

+ (synopsis "Matplotlib colormaps from the yt project")

+ (description

+ "This package provides a range of colormaps designed for scientific

+use with Matplotlib. It includes perceptually uniform sequential colormaps such

+as @code{abre}, @code{dusk}, @code{kepl}, and @code{octarine}, as well as

+monochromatic sequential colormaps like @code{blue}, @code{green}, and

+@code{red}, and others (@code{algae}, @code{pastel}, and @code{xray}).")

+ (license license:bsd-3)))

+

+++ b/gnu/packages/python-xyz.scm

+(define-public python-pydantic-settings

+ (package

+ (name "python-pydantic-settings")

+ (version "2.2.1")

+ (source

+ (origin

+ (method url-fetch)

+ (uri (pypi-uri "pydantic_settings" version))

+ (sha256

+ (base32 "1vf58f398ngk6wpf0jn51ghw65mjs3m03yn06h25jlsmx6jzdf80"))))

+ (build-system pyproject-build-system)

+ (arguments

+ (list

+ #:test-flags

+ #~(list "-k" (string-append

+ ;; Disable tests requiring python-ruff.

+ "not test_docs_examples[docs/index.md:24-83]"

+ " and not test_docs_examples[docs/index.md:113-137]"

+ " and not test_docs_examples[docs/index.md:148-156]"

+ " and not test_docs_examples[docs/index.md:173-183]"

+ " and not test_docs_examples[docs/index.md:193-201]"

+ " and not test_docs_examples[docs/index.md:212-243]"

+ " and not test_docs_examples[docs/index.md:286-317]"

+ " and not test_docs_examples[docs/index.md:331-372]"

+ " and not test_docs_examples[docs/index.md:430-439]"

+ " and not test_docs_examples[docs/index.md:453-459]"

+ " and not test_docs_examples[docs/index.md:514-522]"

+ " and not test_docs_examples[docs/index.md:547-549]"

+ " and not test_docs_examples[docs/index.md:553-585]"

+ " and not test_docs_examples[docs/index.md:620-645]"

+ " and not test_docs_examples[docs/index.md:654-732]"

+ " and not test_docs_examples[docs/index.md:738-772]"))

+ #:phases

+ #~(modify-phases %standard-phases

+ (add-after 'unpack 'relax-requirements

+ (lambda _

+ (substitute* "pyproject.toml"

+ ;; hatchling.build failed on this line with error:

+ ;; ValueError: Unknown classifier in field

+ ;; `project.classifiers`: Framework :: Pydantic :: 2

+ (("'Framework :: Pydantic :: 2',") "")

+ ;; python-dotenv>=0.21.0

+ ((">=0.21.0") ">=0.20.0"))))

+ (add-before 'check 'set-home

+ (lambda _

+ ;; FileNotFoundError: [Errno 2] No such file or directory:

+ ;; '/homeless-shelter/

+ (setenv "HOME" "/tmp"))))))

+ (propagated-inputs

+ (list python-dotenv

+ python-pydantic-2

+ python-pyaml

+ python-tomli))

+ (native-inputs

+ (list python-hatchling

+ python-pytest

+ python-pytest-examples

+ python-pytest-mock))

+ (home-page "https://docs.pydantic.dev/latest/usage/pydantic_settings/")

+ (synopsis "Settings management using Pydantic")

+ (description

+ "Pydantic Settings provides optional Pydantic features for loading a

+settings or config class from environment variables or secrets files.")

+ (license license:expat)))

+

+++ b/gnu/packages/check.scm

+(define-public python-pytest-examples

+ (package

+ (name "python-pytest-examples")

+ (version "0.0.10")

+ (source

+ (origin

+ ;; No tests in the PyPI tarball.

+ (method git-fetch)

+ (uri (git-reference

+ (url "https://github.com/pydantic/pytest-examples")

+ (commit (string-append "v" version))))

+ (file-name (git-file-name name version))

+ (sha256

+ (base32 "0lwxgyfj6lnkhmrvb6kzfskpwfz70kxnhnjvyl3l65k568c4wb4c"))))

+ (build-system pyproject-build-system)

+ (arguments

+ (list

+ #:test-flags

+ #~(list "-k"

+ (string-append

+ ;; Disable tests requiring pthon-ruff.

+ "not test_ruff"

+ " and not test_ruff_config"

+ " and not test_ruff_offset"

+ " and not test_ruff_ok"

+ " and not test_ruff_error"

+ " and not test_update_files"

+ " and not test_cases_update[simple.md]"

+ " and not test_cases_update[dataclass_indent.md]"

+ " and not test_cases_update[long_python_lines.py]"

+ " and not test_cases_update[simple.py]"

+ " and not test_cases_update[python_class.py]"

+ " and not test_cases_update[call_twice.md]"

+ " and not test_insert_print[example/README.md:3-33]"

+ " and not test_insert_print[example/README.md:37-40]"

+ " and not test_insert_print[example/README.md:44-47]"

+ " and not test_insert_print[example/README.md:49-66]"

+ " and not test_python_self[example/test_example.py:28-31]"

+ " and not test_python_self[example/test_example.py:40-43]"

+ " and not test_python_self_change_docstyle[example/test_example.py:28-31]"

+ " and not test_python_self_change_docstyle[example/test_example.py:40-43]"))

+ #:phases

+ #~(modify-phases %standard-phases

+ (add-after 'unpack 'relax-requirements

+ (lambda _

+ (substitute* "pyproject.toml"

+ ;; XXX: Removing ruff from required packages to pass Sanity

+ ;; check, add it back when it's available.

+ (("'ruff>=0.0.258',") "")

+ ;; black>=23

+ ((">=23") ">22")))))))

+ (propagated-inputs

+ ;; TODO: Add python-ruff once it has been packaged.

+ (list python-black python-pytest))

+ (native-inputs

+ (list python-hatchling))

+ (home-page "https://pypi.org/project/pytest-examples/")

+ (synopsis "Pytest plugin for testing examples in docstrings and markdown files")

+ (description

+ "Pytest-examples provides functionality for testing Python code examples

+in docstrings and markdown files, with its main features being:

+

+@itemize

+@item lint code examples using ruff and black

+@item run code examples

+@item run code examples and check print statements are inlined correctly in

+the code

+@item It can also update code examples in place to format them and insert or

+update print statements

+@end itemize")

+ (license license:expat)))

+

+++ b/gnu/packages/astronomy.scm

+ (version "1.1.0")

+ (base32 "0bly1bgp0axxhzzf5imqsgmms41z8cxbjahxsibvb55dk94gwig6"))))

+ (propagated-inputs

+ (list python-pydantic-2 python-pydantic-settings python-requests))

+ (native-inputs

+ (list python-pytest python-pytest-astropy))