[PATCH] gnu: r-harmony: Update to 1.2.0.

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  • nafkhamdc
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nafkhamdc
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nafkhamdc wrote on 15 Feb 16:40 +0100
(address . guix-patches@gnu.org)(name . nafkhamdc)(address . navid.afkhami@mdc-berlin.de)
88868cdb132cbdd5e0a39ef61d271e9cb9397be4.1708011619.git.navid.afkhami@mdc-berlin.de
* gnu/packages/cran.scm (r-harmony): Update to 1.2.0.
[propagated-inputs]: Remove r-irlba and r-tidyr; add r-rhpcblasctl.
[native-inputs]: Remove autoconf; add r-knitr.

Change-Id: I3c554bbb29ccc2b8a24d2d46e362b7d7cae56c1c
---
gnu/packages/cran.scm | 52 +++++++++++++++++--------------------------
1 file changed, 20 insertions(+), 32 deletions(-)

Toggle diff (74 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3b8ad2baac..fa28814827 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -26934,44 +26934,32 @@ (define-public r-liger
(define-public r-harmony
(package
(name "r-harmony")
- (version "0.1")
+ (version "1.2.0")
(source
(origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/immunogenomics/harmony")
- (commit version)))
- (file-name (git-file-name name version))
+ (method url-fetch)
+ (uri (cran-uri "harmony" version))
(sha256
- (base32
- "05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- (for-each delete-file '("config.status" "configure"))
- #t))))
+ (base32 "1df7bb9ba3m0c44fhmh8cs4hlkh4fffjwm8rz7l87lf5pdy7sg56"))))
+ (properties `((upstream-name . "harmony")))
(build-system r-build-system)
- (propagated-inputs
- (list r-cowplot
- r-dplyr
- r-ggplot2
- r-irlba
- r-matrix
- r-rcpp
- r-rcpparmadillo
- r-rcppprogress
- r-rlang
- r-tibble
- r-tidyr))
- (native-inputs
- (list autoconf))
- (home-page "https://github.com/immunogenomics/harmony")
+ (propagated-inputs (list r-cowplot
+ r-dplyr
+ r-ggplot2
+ r-matrix
+ r-rcpp
+ r-rcpparmadillo
+ r-rcppprogress
+ r-rhpcblasctl
+ r-rlang
+ r-tibble))
+ (native-inputs (list r-knitr))
+ (home-page "https://cran.r-project.org/web/packages/harmony/index.html")
(synopsis "Integration of single cell sequencing data")
(description
- "This package provides an implementation of the Harmony algorithm for
-single cell integration, described in Korsunsky et al
-@url{doi.org/10.1101/461954}. The package includes a standalone Harmony
-function and interfaces to external frameworks.")
+ "Implementation of the Harmony algorithm for single cell integration.
+This package includes a standalone Harmony function and interfaces to
+external frameworks.")
(license license:gpl3)))
(define-public r-covr

base-commit: 2ba2875dbda4b080fcad4e6d672bb4104d59dd0c
prerequisite-patch-id: 4e4ac5c149de95802186383997235d855b9d08de
--
2.34.1
?