MadalinIonel.Patrascu@mdc-berlin.de wrote 1 years ago
(name . guix-patches@gnu.org)(address . guix-patches@gnu.org)
7b22d6bf3f264770861f78df4a09c426@mdc-berlin.de
* gnu/packages/cran.scm (r-imifa, r-imifa): New variables.
[Patch]: gnu: Add r-mvnfast and r-imifa.
- Done
Details
- 3 participants
- MadalinIonel.Patrascu@mdc-berlin.de
- Mădălin Ionel Patrașcu
- Ricardo Wurmus
- Owner
- unassigned
- Submitted by
- MadalinIonel.Patrascu@mdc-berlin.de
- Severity
- normal
Mădălin Ionel Patrașcu wrote 1 years ago
[PATCH 2/2] gnu: Add r-imifa.
(address . 68951@debbugs.gnu.org)
b4533b7f64955a88faaa2356fed859e37e2a95ef.1707234530.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-imifa): New variable.
Change-Id: I0046faadb9546ae1fa8437db72b784307deba241
---
gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)
Toggle diff (48 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ef4f235e65..74ab2f78e5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11768,6 +11768,41 @@ (define-public r-cqrreg
and @dfn{alternating direction method of multipliers algorithms} (ADMM).")
(license license:gpl2+)))
+(define-public r-imifa
+ (package
+ (name "r-imifa")
+ (version "2.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "IMIFA" version))
+ (sha256
+ (base32 "08h53w1axvmvnd4z1nf5bsps5sr6g8a77q6pvg39ss7jcfqm800v"))))
+ (properties `((upstream-name . "IMIFA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-matrixstats
+ r-mvnfast
+ r-mclust
+ r-rfast
+ r-slam
+ r-viridislite))
+ (native-inputs (list r-knitr))
+ (home-page "https://cran.r-project.org/package=IMIFA")
+ (synopsis
+ "Infinite mixtures of infinite factor analysers and related models")
+ (description
+ "This package provides flexible Bayesian estimation of @acronym{IMIFA,
+infinite mixtures of infinite factor analysers} and related models, for
+nonparametrically clustering high-dimensional data. The IMIFA model conducts
+Bayesian nonparametric model-based clustering with factor analytic covariance
+structures without recourse to model selection criteria to choose the number of
+clusters or cluster-specific latent factors, mostly via efficient Gibbs updates.
+Model-specific diagnostic tools are also provided, as well as many options for
+plotting results, conducting posterior inference on parameters of interest,
+posterior predictive checking, and quantifying uncertainty.")
+ (license license:gpl3+)))
+
(define-public r-import
(package
(name "r-import")
--
2.41.0
Mădălin Ionel Patrașcu wrote 1 years ago
[PATCH 1/2] gnu: Add r-mvnfast.
(address . 68951@debbugs.gnu.org)
d41f5b5dc2be14d4a9c43a7534d77042b4781e24.1707234530.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mvnfast): New variable.
Change-Id: I17b1d1da941248fde466aa90304481cae9ca60fe
---
gnu/packages/cran.scm | 26 +++++++++++++++++++++++++-
1 file changed, 25 insertions(+), 1 deletion(-)
Toggle diff (48 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 842946e766..ef4f235e65 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11,7 +11,7 @@
;;; Copyright © 2018 Sandeep Subramanian <sandeepsubramanian94@gmail.com>
;;; Copyright © 2018 Charlie Ritter <chewzeirta@posteo.net>
;;; Copyright © 2018 Konrad Hinsen <konrad.hinsen@fastmail.net>
-;;; Copyright © 2018, 2020-2023 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2018, 2020-2024 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2018 Laura Lazzati <laura.lazzati.15@gmail.com>
;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
@@ -17911,6 +17911,30 @@ (define-public r-mvabund
analysing multivariate abundance data in community ecology.")
(license license:lgpl2.1+)))
+(define-public r-mvnfast
+ (package
+ (name "r-mvnfast")
+ (version "0.2.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mvnfast" version))
+ (sha256
+ (base32 "1869xqq2wd7yw23q4ma5qawcnbdp7myafk6rdxazqymqak7f0wc8"))))
+ (properties `((upstream-name . "mvnfast")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bh r-rcpp r-rcpparmadillo))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/mfasiolo/mvnfast/")
+ (synopsis "Fast multivariate normal and Student's t methods")
+ (description
+ "This package provides computationally efficient tools related to the
+multivariate normal and Student's t distributions. The main functionalities
+are: simulating multivariate random vectors, evaluating multivariate normal or
+Student's t densities and Mahalanobis distances. These tools are developed
+using C++ code and of the OpenMP API.")
+ (license license:gpl2+)))
+
(define-public r-afex
(package
(name "r-afex")
base-commit: a4464bd0975c811f18af98f69032b29bddda5b81
--
2.41.0
Ricardo Wurmus wrote 1 years ago
(name . Mădălin Ionel Patrașcu)(address . madalinionel.patrascu@mdc-berlin.de)(address . 68951-done@debbugs.gnu.org)
871q9p70zg.fsf@elephly.net
Hi Mădălin,
Toggle quote (2 lines)
> * gnu/packages/cran.scm (r-mvnfast): New variable.
Pushed this and the other patch with commit
b13d6c5715b71c4499ce37ef3968e4216125a5ed.
Thank you for the patches!
--
Ricardo
Closed
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