nafkhamdc wrote 1 years ago
(address . guix-patches@gnu.org)(name . nafkhamdc)(address . navid.afkhami@mdc-berlin.de)
c61c85dc59f58ea507efe7016c59d2efface5b37.1704896557.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.
Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
---
gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
Toggle diff (37 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7c4272f8be..e4021fe756 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6003,6 +6003,27 @@ (define-public r-deconstructsigs
closely reconstructs the mutational profile.")
(license license:gpl2+)))
+(define-public r-jaspar2020
+ (package
+ (name "r-jaspar2020")
+ (version "0.99.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "JASPAR2020" version
+ 'annotation))
+ (sha256
+ (base32 "0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"))))
+ (properties `((upstream-name . "JASPAR2020")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://jaspar.elixir.no/")
+ (synopsis "Data package for JASPAR database (version 2020)")
+ (description "Data package for JASPAR2020.
+To explore these databases, utilize the TFBSTools
+package (version 1.23.1 or higher).")
+ (license license:gpl2)))
+
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-jetset
(package
base-commit: 537768018ee03a6a9a5562022a16b47ac287d131
prerequisite-patch-id: 103e1e7922398cbadee6250d96974c6b8ca89fdb
--
2.34.1