Mădălin Ionel Patrașcu wrote 1 years ago
(address . guix-patches@gnu.org)
a22bac1b-8401-4302-b377-0efccff47e77@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-ewastools): New variable.
* gnu/packages/cran.scm (r-mblm): New variable.
gnu: Add r-ewastools and r-mblm.
- Done
Details
- 2 participants
- Mădălin Ionel Patrașcu
- Ricardo Wurmus
- Owner
- unassigned
- Submitted by
- Mădălin Ionel Patrașcu
- Severity
- normal
Mădălin Ionel Patrașcu wrote 1 years ago
[PATCH 2/2] gnu: Add r-ewastools.
(address . 66917@debbugs.gnu.org)
a3df51adf12ddf980958d0b0b2471a86741cc5ab.1699023357.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-ewastools): New variable.
Change-Id: I4117dbee188c7d9547fe63b2b89ec9258bbda60b
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
Toggle diff (45 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a47e84bc33..11ca777fa2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -876,6 +876,38 @@ (define-public r-conqur
simultaneously considered.")
(license license:gpl3))))
+(define-public r-ewastools
+ (let ((commit "f7646cacd73266708479b3fea5d625054d179f95")
+ (revision "1"))
+ (package
+ (name "r-ewastools")
+ (version (git-version "1.7.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/hhhh5/ewastools/")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0irarlnxfnasa755adxsn67rxsy01zwhjhw18g4cag08cqiyyw41"))))
+ (properties `((upstream-name . "ewastools")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-data-table
+ r-igraph
+ r-illuminaio
+ r-mblm
+ r-quadprog))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/hhhh5/ewastools/")
+ (synopsis
+ "Quality control toolset for the Illumina Infinium DNA methylation")
+ (description
+ "Collection of useful functions for working with DNA methylation
+micro-array data.")
+ (license license:unlicense))))
+
(define-public r-numbat
(let ((commit "4ab7752e7d267a3f443756675728521a9b0a7295")
(revision "1"))
--
2.41.0
Mădălin Ionel Patrașcu wrote 1 years ago
[PATCH 1/2] gnu: Add r-mblm.
(address . 66917@debbugs.gnu.org)
395c833b4e654eb62fb10c892716422b634080e5.1699023357.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mblm): New variable.
Change-Id: Iddfa9bc03a4e5782623253cb70d1ae888545e2ec
---
gnu/packages/cran.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
Toggle diff (36 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f2a035555b..ec7200749a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3149,6 +3149,27 @@ (define-public r-matrix-utils
objects.")
(license license:gpl3)))
+(define-public r-mblm
+ (package
+ (name "r-mblm")
+ (version "0.12.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mblm" version))
+ (sha256
+ (base32 "1fipb3bryaimr30lcxsxrn0ymv24z39swca7s4z7p9xcfg3ban1b"))))
+ (properties `((upstream-name . "mblm")))
+ (build-system r-build-system)
+ (home-page "https://www.r-project.org")
+ (synopsis "Median-based linear models")
+ (description
+ "This package provides linear models based on Theil-Sen single median and
+Siegel repeated medians. They are very robust (29 or 50 percent breakdown point,
+respectively), and if no outliers are present, the estimators are very similar
+to OLS.")
+ (license license:gpl2+)))
+
(define-public r-mboost
(package
(name "r-mboost")
base-commit: a0a377fdd6c873aeb6340afeddcd23b4ead7657d
--
2.41.0
Ricardo Wurmus wrote 1 years ago
(name . Mădălin Ionel Patrașcu)(address . madalinionel.patrascu@mdc-berlin.de)(address . 66917-done@debbugs.gnu.org)
87fs1lsduy.fsf@elephly.net
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
Toggle quote (2 lines)
> * gnu/packages/cran.scm (r-mblm): New variable.
I applied this series with minor changes. Thanks!
--
Ricardo
Closed
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