Afkhami, Navid wrote 1 years ago
(address . guix-patches@gnu.org)(name . Afkhami, Navid)(address . Navid.Afkhami@mdc-berlin.de)
a9e93013af91a26f43f33a3cc105924ecac128ea.1697199129.git.Navid.Afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
Toggle diff (45 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f6946b72c8..c3e65dda56 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1711,6 +1711,36 @@ (define-public r-italicsdata
;; Expanded from GPL
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-mafh5-gnomad-v3-1-2-grch38
+ (package
+ (name "r-mafh5-gnomad-v3-1-2-grch38")
+ (version "3.15.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MafH5.gnomAD.v3.1.2.GRCh38" version
+ 'annotation))
+ (sha256
+ (base32 "18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"))))
+ (properties `((upstream-name . "MafH5.gnomAD.v3.1.2.GRCh38")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bsgenome
+ r-genomeinfodb
+ r-genomicranges
+ r-genomicscores
+ r-hdf5array
+ r-iranges
+ r-rhdf5
+ r-s4vectors))
+ (home-page "https://bioconductor.org/packages/MafH5.gnomAD.v3.1.2.GRCh38")
+ (synopsis
+ "Minor allele frequency data from gnomAD version 3.1.2 for GRCh38")
+ (description
+ "This package is designed to store minor allele frequency data.
+It retrieves this data from the Genome Aggregation Database
+(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.")
+ (license license:artistic2.0)))
+
(define-public r-macrophage
(package
(name "r-macrophage")
base-commit: 844dd7dac76fa491a052df1d117a5d817cc8087c
--
2.34.1