[PATCH] gnu: Add r-interactivedisplay.

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2 participants
  • Navid Afkhami
  • Ricardo Wurmus
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unassigned
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Navid Afkhami
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normal

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Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
8b873349673578098691476c6e023579ea78af96.1693691804.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)

Toggle diff (56 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0070d7777c..f2cb268069 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7734,6 +7734,44 @@ (define-public r-impute
microarray data, using nearest neighbor averaging.")
(license license:gpl2+)))
+(define-public r-interactivedisplay
+ (package
+ (name "r-interactivedisplay")
+ (version "1.38.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "interactiveDisplay" version))
+ (sha256
+ (base32
+ "1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl"))))
+ (properties `((upstream-name . "interactiveDisplay")))
+ (build-system r-build-system)
+ (propagated-inputs (list curl
+ zlib
+ r-annotationdbi
+ r-biocgenerics
+ r-biocmanager
+ r-category
+ r-dt
+ r-ggplot2
+ r-gridsvg
+ r-interactivedisplaybase
+ r-plyr
+ r-rcolorbrewer
+ r-reshape2
+ r-shiny
+ r-zlibbioc
+ r-xml))
+ (native-inputs (list esbuild r-knitr))
+ (home-page "https://bioconductor.org/packages/interactiveDisplay")
+ (synopsis
+ "Package for enabling powerful shiny web displays of Bioconductor objects")
+ (description
+ "This package offers interactive Shiny displays for Bioconductor objects.
+In addition, this package empower users to develop engaging visualizations
+and interfaces for working with Bioconductor data.")
+ (license license:artistic2.0)))
+
(define-public r-interactivedisplaybase
(package
(name "r-interactivedisplaybase")

base-commit: c72bc0bb71a7315241c174636f96faee46a6dfa8
prerequisite-patch-id: 70b98dde8ca4056fb8bd1b731716853ac2c9f0a1
prerequisite-patch-id: da79dfabf48a66d58c294d8a8a5e036808df44d3
prerequisite-patch-id: b1b6000ebee26b162e35b26bffc5b8a6fdf820d8
--
2.34.1
Navid Afkhami wrote 1 years ago
(address . 65707@debbugs.gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
db638a0b678ef09e3f5463c27a9b88d5f558ab96.1694531662.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)

Toggle diff (59 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c913232680..9c03366f8b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7734,6 +7734,50 @@ (define-public r-impute
microarray data, using nearest neighbor averaging.")
(license license:gpl2+)))
+(define-public r-interactivedisplay
+ (package
+ (name "r-interactivedisplay")
+ (version "1.38.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "interactiveDisplay" version))
+ (sha256
+ (base32
+ "1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl"))))
+ (properties `((upstream-name . "interactiveDisplay")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-annotationdbi
+ r-biocgenerics
+ r-biocmanager
+ r-category
+ r-dt
+ r-ggplot2
+ r-gridsvg
+ r-interactivedisplaybase
+ r-plyr
+ r-rcolorbrewer
+ r-reshape2
+ r-shiny
+ r-zlibbioc
+ r-xml))
+ (native-inputs `(("esbuild" ,esbuild)
+ ("r-knitr" ,r-knitr)
+("js-jquery-1.9.1"
+,(origin
+ (method url-fetch)
+ (uri "https://code.jquery.com/jquery-1.9.1.js")
+ (sha256
+ (base32
+ "0h4dk67yc9d0kadqxb6b33585f3x3559p6qmp70l00qwq030vn3v"))))))
+ (home-page "https://bioconductor.org/packages/interactiveDisplay")
+ (synopsis
+ "Package for enabling powerful shiny web displays of Bioconductor objects")
+ (description
+ "This package offers interactive Shiny displays for Bioconductor objects.
+In addition, this package empower users to develop engaging visualizations
+and interfaces for working with Bioconductor data.")
+ (license license:artistic2.0)))
+
(define-public r-interactivedisplaybase
(package
(name "r-interactivedisplaybase")

base-commit: 45af7b89239d4bbdc145a5c9cc03356f31d5a20e
--
2.34.1
Ricardo Wurmus wrote 1 years ago
(address . 65707-done@debbugs.gnu.org)
87y1h7xh7m.fsf@elephly.net
Thanks for the patch!

This needed a little more work to replace the bundled JavaScript. You
can see the result in commit cda20190bccf9bd55c264b1084eab8b6499c15cc.

--
Ricardo
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