Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
ab4446c5f3df2c236cd43eeec34ce85c9ff50276.1693601111.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-trackviewer): New variable.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
Toggle diff (55 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 88592c4f71..0070d7777c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9931,6 +9931,48 @@ (define-public r-tkwidgets
"This package implements widgets to provide user interfaces.")
(license license:artistic2.0)))
+(define-public r-trackviewer
+ (package
+ (name "r-trackviewer")
+ (version "1.36.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "trackViewer" version))
+ (sha256
+ (base32
+ "1ngfpd308y8i3vgv07cggk2azs64lsyyc9zfi3pz0gapr33ha6a1"))))
+ (properties `((upstream-name . "trackViewer")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-annotationdbi
+ r-biocgenerics
+ r-genomeinfodb
+ r-genomicalignments
+ r-genomicfeatures
+ r-genomicranges
+ r-graph
+ r-grimport
+ r-gviz
+ r-htmlwidgets
+ r-interactionset
+ r-iranges
+ r-plotrix
+ r-rgraphviz
+ r-rhdf5
+ r-rsamtools
+ r-rtracklayer
+ r-s4vectors
+ r-scales
+ r-strawr))
+ (native-inputs (list esbuild r-knitr))
+ (home-page "https://bioconductor.org/packages/trackViewer")
+ (synopsis "Web interface for interactive multi-omics data analysis")
+ (description
+ "TrackViewer offers multi-omics analysis with web based tracks and lollipops.
+Visualize mapped reads along with annotation as track layers for NGS dataset
+such as @code{ChIP-seq,} RNA-seq, @code{miRNA-seq,} DNA-seq, SNPs and
+methylation data.")
+ (license license:gpl2+)))
+
(define-public r-transcriptr
(package
(name "r-transcriptr")
--
2.34.1