Mădălin Ionel Patrașcu wrote 2 years ago
(address . guix-patches@gnu.org)
20230511163016.19814-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
Toggle diff (59 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cb441655eb..b54585e97f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4897,6 +4897,50 @@ (define-public r-drimseq
results.")
(license license:gpl3+)))
+(define-public r-dropletutils
+ (package
+ (name "r-dropletutils")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DropletUtils" version))
+ (sha256
+ (base32 "09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y"))))
+ (properties `((upstream-name . "DropletUtils")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-beachmat
+ r-bh
+ r-biocgenerics
+ r-biocparallel
+ r-delayedarray
+ r-delayedmatrixstats
+ r-dqrng
+ r-edger
+ r-genomicranges
+ r-hdf5array
+ r-iranges
+ r-matrix
+ r-r-utils
+ r-rcpp
+ r-rhdf5
+ r-rhdf5lib
+ r-s4vectors
+ r-scuttle
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/DropletUtils")
+ (synopsis "Utilities for handling single-cell droplet data")
+ (description
+ "This package provides a number of utility functions for handling
+single-cell (RNA-seq) data from droplet technologies such as 10X Genomics.
+This includes data loading from count matrices or molecule information files,
+identification of cells from empty droplets, removal of barcode-swapped pseudo-
+cells, and downsampling of the count matrix.")
+ (license license:gpl3)))
+
(define-public r-dss
(package
(name "r-dss")
base-commit: e2eb43f945fd467e9b55a4b3c91cd186cf32e268
--
2.39.2