Mădălin Ionel Patrașcu wrote 2 years ago
(address . guix-patches@gnu.org)
20230504154640.1833-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-multibac): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
Toggle diff (46 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 768b55b25e..299d772bd2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10101,6 +10101,37 @@ (define-public r-mbkmeans
large datasets, including support for on-disk data representation.")
(license license:expat)))
+(define-public r-multibac
+ (package
+ (name "r-multibac")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MultiBaC" version))
+ (sha256
+ (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i"))))
+ (properties `((upstream-name . "MultiBaC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ggplot2
+ r-matrix
+ r-multiassayexperiment
+ r-pcamethods
+ r-plotrix
+ r-ropls))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/MultiBaC")
+ (synopsis "Multiomic batch effect correction")
+ (description
+ "MultiBaC is a strategy to correct batch effects from multiomic datasets
+distributed across different labs or data acquisition events. This package is
+the first batch effect correction algorithm that dealing with batch effect
+correction in multiomics datasets. MultiBaC is able to remove batch effects
+across different omics generated within separate batches provided that at least
+one common omic data type is included in all the batches considered.")
+ (license license:gpl3)))
+
(define-public r-multtest
(package
(name "r-multtest")
base-commit: 7a0a186a32524d4156bf96786d708fab323cebff
--
2.39.2