Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
7a9dadbaaecb1eab3d713b921a4d808154ac7f99.1683212209.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-goatools): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
Toggle diff (46 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7db8a91e80..db76d04594 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12337,6 +12337,37 @@ (define-public python-genomic-regions
using the same syntax.")
(license license:expat)))
+(define-public python-goatools
+ (package
+ (name "python-goatools")
+ (version "1.3.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "goatools" version))
+ (sha256
+ (base32
+ "1p53h7bnbmi23lcgsajf9vb8vxgjp6lmbz0hl1cx62230jvbfp62"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:tests? #f))
+ (propagated-inputs (list python-docopt
+ python-numpy
+ python-openpyxl
+ python-pandas
+ python-pydot
+ python-requests
+ python-scipy
+ python-statsmodels
+ python-xlsxwriter))
+ (home-page "https://github.com/tanghaibao/goatools")
+ (synopsis "Python scripts to find enrichment of GO terms")
+ (description "Python scripts to find enrichment of GO terms.
+In addition, this package is used for processing the
+obo-formatted file from Gene Ontology website. The
+data structure is a directed acyclic graph that allows
+easy traversal from leaf to root.")
+ (license license:bsd-3)))
+
(define-public python-loompy
(package
(name "python-loompy")
base-commit: f0a51a2bda26f9cc1e0b54b48712bd7cc54408e9
--
2.34.1