Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
20230421102845.46529-1-navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-rseqc): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
Toggle diff (37 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b27e12a5b4..ecc1815539 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3060,6 +3060,30 @@ (define-public python-pysam
also includes an interface for tabix.")
(license license:expat)))
+(define-public python-rseqc
+ (package
+ (name "python-rseqc")
+ (version "5.0.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "RSeQC" version))
+ (sha256
+ (base32
+ "106av4ms6agrfjdlw5j3fsrk86clr0f4ygysv19g66l6hj3laz9w"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-bx-python python-numpy python-pybigwig
+ python-pysam))
+ (native-inputs (list python-cython python-nose))
+ (home-page "https://github.com/MonashBioinformaticsPlatform/RSeQC")
+ (synopsis "RNA-seq quality control packag")
+ (description
+ "Useful modules that can comprehensively evaluate high throughput sequence data.
+Some basic modules quickly inspect sequence, quality, nucleotide composition bias,
+PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation,
+mapped reads distribution, coverage uniformity, strand specificity, transcript level
+RNA integrity and etc.")
+ (license license:gpl3)))
+
(define-public python-twobitreader
(package
(name "python-twobitreader")
--
2.34.1