Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)
20230416102812.60375-1-navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable.
---
gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
Toggle diff (54 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b5442dd0ad..1919866731 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9662,6 +9662,47 @@ (define-public r-demuxmix
rates can be estimated, and methods for quality control are provided.")
(license license:artistic2.0))))
+(define-public r-demultiplex2
+ (let ((commit "e42bc8310c0ea035af100e6ccea59b46ad6385f5")
+ (revision "1"))
+ (package
+ (name "r-demultiplex2")
+ (version (git-version "1.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/Gartner-Lab/deMULTIplex2")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "15f3kshsdvm97w24ql9b1wjlfbabimdsam0482hg7jivlvpl8j9w"))))
+ (properties `((upstream-name . "deMULTIplex2")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-data-table
+ r-devtools
+ r-dplyr
+ r-ggextra
+ r-ggplot2
+ r-gridextra
+ r-magrittr
+ r-mass
+ r-matrix
+ r-rcolorbrewer
+ r-shortread
+ r-stringdist
+ r-tidyr
+ r-uwot
+ r-viridis
+ r-xvector))
+ (home-page "https://github.com/Gartner-Lab/deMULTIplex2")
+ (synopsis "Robust sample demultiplexing for scRNA-seq")
+ (description
+ "Bioinformatics algorithm for demultiplexing multiplexed single cell datasets.
+It is built on a statistical model of tag read counts derived from
+the physical mechanism of tag cross-contamination.")
+ (license license:cc0))))
+
(define-public r-demultiplex
(let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
(revision "1"))
--
2.34.1