Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)
20230416100948.59730-1-navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-demuxmix): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 99cc056f9f..b5442dd0ad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9632,6 +9632,36 @@ (define-public r-centipede
information as possible.")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-demuxmix
+ (let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
+ (revision "1"))
+ (package
+ (name "r-demuxmix")
+ (version (git-version "1.1.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/huklein/demuxmix")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
+ (properties `((upstream-name . "demuxmix")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/huklein/demuxmix")
+ (synopsis
+ "Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models")
+ (description
+ "This package is used for demultiplexing single-cell sequencing experiments of pooled cells.
+These cells are labeled with barcode oligonucleotides. The package
+implements methods to fit regression mixture models for a probabilistic
+classification of cells, including multiplet detection. Demultiplexing error
+rates can be estimated, and methods for quality control are provided.")
+ (license license:artistic2.0))))
+
(define-public r-demultiplex
(let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
(revision "1"))
--
2.34.1