Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)
20230202160023.45975-1-navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-pegasusio): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 714db27c16..6caf0e4cfa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1136,6 +1136,36 @@ (define-public python-htsget
servers supporting the protocol.")
(license license:asl2.0)))
+(define-public python-pegasusio
+ (package
+ (name "python-pegasusio")
+ (version "0.7.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "pegasusio" version))
+ (sha256
+ (base32
+ "0gqygspdy398vjymdy6756jmk99s7fhwav9rivdx59kpqjcdxaz9"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-anndata
+ python-docopt
+ python-h5py
+ python-importlib-metadata
+ python-loompy
+ python-natsort
+ python-numpy
+ python-pandas
+ python-pillow
+ python-scipy
+ python-zarr))
+ (native-inputs (list python-cython python-setuptools-scm))
+ (home-page "https://github.com/lilab-bcb/pegasusio")
+ (synopsis
+ "Pegasusio is a Python package for reading or writing single-cell genomics data")
+ (description
+ "Pegasusio is a Python package for reading or writing single-cell genomics data.")
+ (license license:bsd-3)))
+
(define-public python-phylophlan
(package
(name "python-phylophlan")
--
2.34.1