Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)
20230202160023.45975-2-navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-demuxem): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
Toggle diff (42 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6caf0e4cfa..406f8616c7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1090,6 +1090,35 @@ (define-public python-cmseq
and sequence consensus.")
(license license:expat)))
+(define-public python-demuxem
+ (package
+ (name "python-demuxem")
+ (version "0.1.7")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "demuxEM" version))
+ (sha256
+ (base32
+ "1bhyxqjk44bmyd26m1smapf68wyf7252kk65i27k50dd3kswgnd6"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-docopt
+ python-importlib-metadata
+ python-numpy
+ python-pandas
+ python-pegasusio
+ python-scikit-learn
+ python-scipy
+ python-seaborn))
+ (native-inputs (list python-cython python-setuptools-scm))
+ (home-page "https://github.com/lilab-bcb/demuxEM")
+ (synopsis
+ "This is a module on analyzing cell-hashing/nucleus-hashing data")
+ (description
+ "This is a module on analyzing cell-hashing/nucleus-hashing data.
+It is the demultiplexing module of Pegasus, which is used by Cumulus
+in demultiplexing step.")
+ (license license:bsd-3)))
+
(define-public python-hclust2
(package
(name "python-hclust2")
--
2.34.1