(address . guix-patches@gnu.org)
20230127150517.33849-1-navid.afkhami@mdc-berlin.de
* gnu/packages/cran.scm (r-castor): New variable.
---
gnu/packages/cran.scm | 28 +++++++++++++++++++++++++++-
1 file changed, 27 insertions(+), 1 deletion(-)
Toggle diff (48 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index dce349890a..51c9230156 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -35,7 +35,7 @@
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
;;; Copyright © 2021 Marcel Schilling <marcel.schilling@uni-luebeck.de>
;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net>
-;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de>
+;;; Copyright © 2022,2023 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
;;;
;;; This file is part of GNU Guix.
@@ -256,6 +256,32 @@ (define-public r-cachem
automatically pruning objects to maintain the constraints.")
(license license:expat)))
+(define-public r-castor
+ (package
+ (name "r-castor")
+ (version "1.7.6")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "castor" version))
+ (sha256
+ (base32
+ "1qbndwmzzpkzgiah0hgid9z5f9iv2j53d515bjcci1591gx1fk36"))))
+ (properties `((upstream-name . "castor")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-matrix r-naturalsort r-rcpp r-rspectra))
+ (home-page "https://cran.r-project.org/package=castor")
+ (synopsis "Efficient phylogenetics on large trees")
+ (description
+ "This tool analyses on massive phylogenies comprising up to millions of tips.
+Functions include pruning, rerooting, calculation of most-recent
+common ancestors, calculating distances from the tree root and calculating
+pairwise distances. In addition, This tool takes care of Calculation of
+phylogenetic signal and mean trait depth (trait conservatism), ancestral state
+reconstruction and hidden character prediction of discrete characters, simulating
+and fitting models of trait evolution, fitting and simulating diversification
+models, dating trees, comparing trees, and reading/writing trees in Newick format.")
+ (license license:gpl2+)))
+
(define-public r-collections
(package
(name "r-collections")
--
2.34.1