Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)
20230120095521.50160-1-navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-tsis): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
Toggle diff (44 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 86d65d2031..cb5f71c40e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8215,6 +8215,37 @@ (define-public r-snapatac
single cell ATAC-seq sequencing data.")
(license license:gpl3)))
+(define-public r-tsis
+ (let ((commit "24460298fbe1d26e4da390f6e4f3d4d9d62334dc")
+ (revision "1"))
+ (package
+ (name "r-tsis")
+ (version (git-version "0.2.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/wyguo/TSIS")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "17c8i25iwhldvs3c51m0wny40iffm8szzijalpwrxhzbv0xa94rb"))))
+ (properties `((upstream-name . "TSIS")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/wyguo/TSIS")
+ (synopsis "Time-series isoform switch of alternative splicing")
+ (description
+ "TSIS is used for detecting transcript isoform switches in time-series data.
+Transcript isoform switches occur when a pair of alternatively spliced isoforms
+reverse the order of their relative expression levels. TSIS characterizes the
+transcript switch by defining the isoform switch time-points for any pair of
+transcript isoforms within a gene. In addition, this tool describes the switch
+using five different features or metrics. Also it filters the results with user’s
+specifications and visualizes the results using different plots for the user to
+examine further details of the switches.")
+ (license license:gpl3))))
+
(define-public r-umi4cpackage
(let ((commit "88b07d896a137418ba6c31c2474b9dbe1d86fc20")
(revision "1"))
--
2.34.1