Navid Afkhami wrote 2 years ago
(address . guix-patches@gnu.org)
20230120085800.47650-2-navid.afkhami@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-scds): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 2 +-
2 files changed, 29 insertions(+), 1 deletion(-)
Toggle diff (61 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 93c6165b62..bdbdeecc35 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12,6 +12,7 @@
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; Copyright © 2021 Nicolas Vallet <nls.vallet@gmail.com>
+;;; Copyright © 2023 Navid Afkhami <Navid.Afkhami@mdc-berlin.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -7678,6 +7679,33 @@ (define-public r-trajectoryutils
structures to hold pseudotime inference results.")
(license license:gpl3)))
+(define-public r-scds
+ (package
+ (name "r-scds")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scds" version))
+ (sha256
+ (base32
+ "0zdf9yf5s0l8ma7d8yhi7bjd964yj84f5h6aq2p0sypjlnc515hd"))))
+ (properties `((upstream-name . "scds")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-dplyr
+ r-matrix
+ r-proc
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-xgboost))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/scds")
+ (synopsis "In-silico doublet annotation for single cell RNA sequencing data")
+ (description
+ "This is an R package for doublet annotation of single cell RNA sequencing data.
+@code{scds} provides methods to annotate doublets in scRNA-seq data computationally.")
+ (license license:expat)))
+
(define-public r-slingshot
(package
(name "r-slingshot")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 86d65d2031..70ac252a8c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23,7 +23,7 @@
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021, 2022, 2023 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
-;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de>
+;;; Copyright © 2022,2023 Navid Afkhami <navid.afkhami@mdc-berlin.de>
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;;
;;; This file is part of GNU Guix.
--
2.34.1