MadalinIonel.Patrascu@mdc-berlin.de wrote 2 years ago
(name . guix-patches@gnu.org)(address . guix-patches@gnu.org)
74d154b3c447432ebf531d0fb7415d91@mdc-berlin.de
[PATCH] gnu: Add r-rapiclient and r-anvil.
- Done
Details
- 3 participants
- MadalinIonel.Patrascu@mdc-berlin.de
- Mădălin Ionel Patrașcu
- Ricardo Wurmus
- Owner
- unassigned
- Submitted by
- MadalinIonel.Patrascu@mdc-berlin.de
- Severity
- normal
Mădălin Ionel Patrașcu wrote 2 years ago
[PATCH 2/2] gnu: Add r-anvil.
(address . 60878@debbugs.gnu.org)
20230117131823.55318-2-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-anvil): New variable.
---
gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
Toggle diff (54 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ca236bcf75..35aed4b62c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2443,6 +2443,47 @@ (define-public r-animalcules
to understand their data better and discover new insights.")
(license license:artistic2.0)))
+(define-public r-anvil
+ (package
+ (name "r-anvil")
+ (version "1.10.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnVIL" version))
+ (sha256
+ (base32
+ "0iqsffkrxv28g9cddx2w05f2dbscwxhh6bpizwa8xaxhvn5bcpsv"))))
+ (properties `((upstream-name . "AnVIL")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocmanager
+ r-dplyr
+ r-dt
+ r-futile-logger
+ r-htmltools
+ r-httr
+ r-jsonlite
+ r-miniui
+ r-rapiclient
+ r-rlang
+ r-shiny
+ r-tibble
+ r-tidyr
+ r-tidyselect))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AnVIL")
+ (synopsis "Provides access to AnVIL, Terra, Leonardo and other projects")
+ (description
+ "The AnVIL is a cloud computing resource developed in part by the National
+Human Genome Research Institute. The AnVIL package provides end-user and developer
+functionality. For the end-user, AnVIL provides fast binary package installation,
+utitlities for working with Terra/AnVIL table and data resources, and convenient
+functions for file movement to and from Google cloud storage. For developers,
+AnVIL provides programatic access to the Terra, Leonardo, Rawls, Dockstore, and
+Gen3 RESTful programming interface, including helper functions to transform JSON
+responses to formats more amenable to manipulation in R.")
+ (license license:artistic2.0)))
+
(define-public r-aldex2
(package
(name "r-aldex2")
--
2.38.1
Mădălin Ionel Patrașcu wrote 2 years ago
[PATCH 1/2] gnu: Add r-rapiclient.
(address . 60878@debbugs.gnu.org)
20230117131823.55318-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-rapiclient): New variable.
---
gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
Toggle diff (39 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3fcbd3b9f6..1914c9d85a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10252,6 +10252,30 @@ (define-public r-collapsibletree
the source data frame.")
(license license:gpl3+)))
+(define-public r-rapiclient
+ (package
+ (name "r-rapiclient")
+ (version "0.1.3")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "rapiclient" version))
+ (sha256
+ (base32
+ "1pm4kdga2nz1cpmchdb0ad8gr3bqfm84b1kl32cyc0x3x5rr2syz"))))
+ (properties `((upstream-name . "rapiclient")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-httr
+ r-jsonlite
+ r-yaml))
+ (home-page "https://github.com/bergant/rapiclient")
+ (synopsis "Dynamic OpenAPI/Swagger client")
+ (description
+ "This package access services specified in OpenAPI (formerly Swagger) format.
+It is not a code generator. The client is generated dynamically as a list of R
+functions.")
+ (license license:expat)))
+
(define-public r-rappdirs
(package
(name "r-rappdirs")
base-commit: 29efa2791dafb042ca8ace77bcf8538fb404d492
--
2.38.1
Ricardo Wurmus wrote 2 years ago
(name . Mădălin Ionel Patrașcu)(address . madalinionel.patrascu@mdc-berlin.de)(address . 60878-done@debbugs.gnu.org)
87o7qrf0fz.fsf@elephly.net
Hi Mădălin,
I applied this series after minor changes to the descriptions.
Thanks!
--
Ricardo
Closed
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