[PATCH 0/5] Lisp-Stat

Done

Details

2 participants

Guillaume Le Vaillant
jgart

Owner: unassigned

Submitted by: jgart

Severity: normal

jgart wrote on 15 Jan 2023 20:10

Recipients:(name . Guix Patches)(address . guix-patches@gnu.org)(name . Guillaume Le Vaillant)(address . glv@posteo.net)

Message-ID:20230115131057.GB12647@dismail.de

Hi,

This patch series packages Lisp-Stat, a statistical computing environment written in Common Lisp.

https://lisp-stat.dev/docs/

jgart wrote on 15 Jan 2023 22:25

[PATCH 1/8] gnu: Add cl-variates.

Recipients:(address . 60835@debbugs.gnu.org)

Message-ID:20230115212520.32718-1-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-variates, ecl-cl-variates,

sbcl-cl-variates): New variables.

Hi,

Here is the patch set.

cephes fails on ecl.

See this issue that I opened:

https://github.com/Lisp-Stat/cephes.cl/issues/2

all best,

jgart

---

gnu/packages/lisp-xyz.scm | 35 ++++++++++++++++++++++++++++++++++-

1 file changed, 34 insertions(+), 1 deletion(-)

Toggle diff (55 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 943d295c5d..35e10b3301 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -28,7 +28,7 @@
 ;;; Copyright © 2021 Cameron Chaparro <cameron@cameronchaparro.com>
 ;;; Copyright © 2021 Charles Jackson <charles.b.jackson@protonmail.com>
 ;;; Copyright © 2021, 2022 Foo Chuan Wei <chuanwei.foo@hotmail.com>
-;;; Copyright © 2021, 2022 jgart <jgart@dismail.de>
+;;; Copyright © 2021, 2022, 2023 jgart <jgart@dismail.de>
 ;;; Copyright © 2021 Aleksandr Vityazev <avityazev@posteo.org>
 ;;; Copyright © 2021 Jacob MacDonald <jaccarmac@gmail.com>
 ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com>
@@ -26644,6 +26644,39 @@ (define-public cl-smug
 (define-public ecl-smug
   (sbcl-package->ecl-package sbcl-smug))
 
+(define-public sbcl-cl-variates
+  (let ((commit "4e7548754d8a8731a42487fae31174db4bf36d47")
+        (revision "0"))
+    (package
+        (name "sbcl-cl-variates")
+        (version "0.9.0")
+        (source
+          (origin
+            (method git-fetch)
+            (uri (git-reference
+                  (url "https://gitlab.common-lisp.net/cl-variates/cl-variates")
+                  (commit commit)))
+            (file-name (git-file-name name version))
+            (sha256
+             (base32 "03wnvfi3yfflpvi0mr732r834msij4vrwdbgf6csh0b8kqxl47zn"))))
+        (build-system asdf-build-system/sbcl)
+        ;; USE-PACKAGE #<PACKAGE "CL-VARIATES"> causes name-conflicts in
+        ;; #<PACKAGE "CL-VARIATES-TEST"> between the following symbols:
+        ;; CL-VARIATES:RANDOM-ELEMENT, LIFT:RANDOM-ELEMENT
+        (arguments (list #:tests? #f))
+        (native-inputs (list sbcl-lift))
+        (home-page "https://gitlab.common-lisp.net/cl-variates/cl-variates")
+        (synopsis "Portable Common Lisp Random Number Generation")
+        (description "The variates package provides portable random number
+    generation as well as numerous distributions.")
+        (license license:expat))))
+
+(define-public cl-variates
+  (sbcl-package->cl-source-package sbcl-cl-variates))
+
+(define-public ecl-cl-variates
+  (sbcl-package->ecl-package sbcl-cl-variates))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:25

[PATCH 2/8] gnu: Add cl-cephes.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115212520.32718-2-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-cephes, sbcl-cephes): New variables.

---

gnu/packages/lisp-xyz.scm | 32 ++++++++++++++++++++++++++++++++

1 file changed, 32 insertions(+)

Toggle diff (45 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 35e10b3301..2da5f7858a 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26677,6 +26677,38 @@ (define-public cl-variates
 (define-public ecl-cl-variates
   (sbcl-package->ecl-package sbcl-cl-variates))
 
+(define-public sbcl-cephes
+  (let ((commit "d87146fa38c8425ffb5fe425eee5eb3e818bacd4")
+        (revision "0"))
+    (package
+      (name "sbcl-cephes")
+      (version (git-version "1.2" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/cephes.cl")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "09adls1lwwzwm1jmvhf11arwlsy5w0bi2rmniahas824mysv77lr"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+        (list sbcl-cffi))
+      (home-page "https://lisp-stat.github.io/cephes.cl/")
+      (synopsis "Common Lisp wrapper for the Cephes Mathematical Library")
+      (description
+"This package provides a common lisp CFFI wrapper for the SciPy version
+of Cephes special functions.")
+      (license license:ms-pl))))
+
+(define-public cl-cephes
+  (sbcl-package->cl-source-package sbcl-cephes))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-cephes
+  (sbcl-package->ecl-package sbcl-cephes))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:25

[PATCH 3/8] gnu: Add cl-statistics.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115212520.32718-3-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-statistics, sbcl-statistics): New
variables.
---
 gnu/packages/lisp-xyz.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

Toggle diff (52 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 2da5f7858a..b0fa3244d5 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26709,6 +26709,45 @@ (define-public cl-cephes
 #;(define-public ecl-cephes
   (sbcl-package->ecl-package sbcl-cephes))
 
+(define-public sbcl-statistics
+  (let ((commit "94fc87a2bf81355a40ce3730b4ed77710ecfabaf")
+        (revision "0"))
+    (package
+      (name "sbcl-statistics")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/statistics")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0is69w6iwh4hyzc5ndgb3i2331f677sa7kw5wy8pmx6hawbkgyir"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-distributions
+              sbcl-let-plus
+              sbcl-numerical-utilities
+              sbcl-conduit-packages))
+      ;; https://github.com/Lisp-Stat/statistics/issues/2
+      (home-page "https://lisp-stat.dev/docs/")
+      (synopsis "Statistical functions in Common Lisp")
+      (description "This package provides a consolidation of Common
+      Lisp statistics
+libraries.")
+      (license (list license:ms-pl license:expat)))))
+
+(define-public cl-statistics
+  (sbcl-package->cl-source-package sbcl-statistics))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2 
+#;(define-public ecl-statistics
+  (sbcl-package->ecl-package sbcl-statistics))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:25

[PATCH 4/8] gnu: Add cl-special-functions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115212520.32718-4-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-special-functions, ecl-special-functions,
sbcl-special-functions): New variables.
---
 gnu/packages/lisp-xyz.scm | 37 +++++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

Toggle diff (50 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index b0fa3244d5..cbc46d6810 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26748,6 +26748,43 @@ (define-public cl-statistics
 #;(define-public ecl-statistics
   (sbcl-package->ecl-package sbcl-statistics))
 
+(define-public sbcl-special-functions
+  (let ((commit "f3ca2792ff3f8351839c366413da6b1bb2965a58")
+        (revision "0"))
+    (package
+      (name "sbcl-special-functions")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/special-functions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "092szffy7zfxgrvfck11wnj8l0mgcym13yiafj01ad02lbj1fnnv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-cl-variates sbcl-fiveam sbcl-select))
+      (inputs
+        (list sbcl-alexandria-plus
+              sbcl-numerical-utilities
+              sbcl-let-plus
+              sbcl-float-features
+              sbcl-conduit-packages))
+      (home-page "https://lisp-stat.dev/docs/resources/special-functions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "This library implements
+@url{http://specialfunctionswiki.org/index.php/Main_Page, special
+functions} and has a focus on high accuracy double-float calculations
+using the latest algorithms.")
+      (license license:ms-pl))))
+
+(define-public cl-special-functions
+  (sbcl-package->cl-source-package sbcl-special-functions))
+
+(define-public ecl-special-functions
+  (sbcl-package->ecl-package sbcl-special-functions))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:25

[PATCH 5/8] gnu: Add cl-distributions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115212520.32718-5-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-distributions, sbcl-distributions):
New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index cbc46d6810..91863f09c9 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26785,6 +26785,47 @@ (define-public cl-special-functions
 (define-public ecl-special-functions
   (sbcl-package->ecl-package sbcl-special-functions))
 
+(define-public sbcl-distributions
+  (let ((commit "ea72622073ee7e005dfdc621ce1e5a83b22bb39e")
+        (revision "0"))
+    (package
+      (name "sbcl-distributions")
+      (version (git-version "1.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/distributions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1fkzigd0s0s0mvszgmv04yc8jp9gm4812445hfh6kpz6cjy5zpsk"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/distributions/issues/1
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-fiveam))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-array-operations
+              sbcl-cephes
+              sbcl-numerical-utilities
+              sbcl-special-functions
+              sbcl-let-plus
+              sbcl-float-features))
+      (home-page "https://lisp-stat.dev/docs/manuals/distributions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "The Distributions package provides a collection of
+probabilistic distributions and related functions")
+      (license license:ms-pl))))
+
+(define-public cl-distributions
+  (sbcl-package->cl-source-package sbcl-distributions))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-distributions
+  (sbcl-package->ecl-package sbcl-distributions))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:25

[PATCH 7/8] gnu: Add cl-dfio.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115212520.32718-7-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-dfio, sbcl-dfio): New variables.

---

gnu/packages/lisp-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++++

1 file changed, 40 insertions(+)

Toggle diff (53 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 18f64a5953..540e7b2211 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26867,6 +26867,46 @@ (define-public cl-data-frame
 (define-public ecl-data-frame
   (sbcl-package->ecl-package sbcl-data-frame))
 
+(define-public sbcl-dfio
+  (let ((commit "f7984b792bf4d9010083db08472bc84d2d31430c")
+        (revision "0"))
+    (package
+      (name "sbcl-dfio")
+      (version (git-version "0.3.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/dfio")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1wka8y4526x8yy3asiy15jxdzhsmyiq6ra6wbi8a4vcry3g2v9a0"))))
+      (build-system asdf-build-system/sbcl)
+      (arguments '(#:asd-systems '("dfio" "dfio/json" "dfio/tests")))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-data-frame
+              sbcl-yason
+              sbcl-dexador
+              sbcl-fare-csv
+              sbcl-let-plus))
+      (native-inputs
+        (list sbcl-clunit2))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Read data to and from data frames")
+      (description "This package provides tools for manipulating data
+using a data frame.")
+      (license license:ms-pl))))
+
+(define-public cl-dfio
+  (sbcl-package->cl-source-package sbcl-dfio))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-dfio
+  (sbcl-package->ecl-package sbcl-dfio))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:25

[PATCH 6/8] gnu: Add cl-data-frame.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115212520.32718-6-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-data-frame, ecl-data-frame,
sbcl-data-frame): New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 91863f09c9..18f64a5953 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26826,6 +26826,47 @@ (define-public cl-distributions
 #;(define-public ecl-distributions
   (sbcl-package->ecl-package sbcl-distributions))
 
+(define-public sbcl-data-frame
+  (let ((commit "6f02e58312654ddf19d686f234dcf699fc4cd0f5")
+        (revision "0"))
+    (package
+      (name "sbcl-data-frame")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/data-frame")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0bs1jh66bml25bj1lxdzz8cjhj3g060yyd5ggqsnsr4l2j0zyszv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-serapeum
+              sbcl-anaphora
+              sbcl-duologue
+              sbcl-statistics
+              sbcl-let-plus
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-numerical-utilities
+              sbcl-select))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Data frames for Common Lisp")
+      (description "This package provides Data frames for Common Lisp, a
+two-dimensional array-like structure in which each column contains values
+of one variable and each row contains one set of values from each column.")
+      (license license:ms-pl))))
+
+(define-public cl-data-frame
+  (sbcl-package->cl-source-package sbcl-data-frame))
+
+(define-public ecl-data-frame
+  (sbcl-package->ecl-package sbcl-data-frame))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:25

[PATCH 8/8] gnu: Add cl-lisp-stat.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115212520.32718-8-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-lisp-stat, sbcl-lisp-stat): New variables.

---

gnu/packages/lisp-xyz.scm | 43 +++++++++++++++++++++++++++++++++++++++

1 file changed, 43 insertions(+)

Toggle diff (56 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 540e7b2211..10b940f732 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26907,6 +26907,49 @@ (define-public cl-dfio
 #;(define-public ecl-dfio
   (sbcl-package->ecl-package sbcl-dfio))
 
+(define-public sbcl-lisp-stat
+  (let ((commit "357a0d2b5f68a5ff925776235c2b7455e12b78ba")
+        (revision "0"))
+    (package
+      (name "sbcl-lisp-stat")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/lisp-stat")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0qwlxrbwj884mr67sf6aj0zwrndv33aiiid4bqrkji41kjhqfcz5"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/lisp-stat/issues/22
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-parachute))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-data-frame
+              sbcl-dfio
+              sbcl-dexador
+              sbcl-distributions
+              sbcl-numerical-utilities
+              sbcl-select
+              sbcl-statistics))
+      (home-page "https://lisp-stat.github.io/lisp-stat")
+      (synopsis "Statistical Computing in Common Lisp")
+      (description "This package provides a statistical computing
+environment for Common Lisp.")
+      (license license:ms-pl))))
+
+(define-public cl-lisp-stat
+  (sbcl-package->cl-source-package sbcl-lisp-stat))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-lisp-stat
+  (sbcl-package->ecl-package sbcl-lisp-stat))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 1/8] gnu: Add cl-cephes.

Recipients:(address . 60835@debbugs.gnu.org)

Message-ID:20230115215551.3740-1-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-cephes, sbcl-cephes): New variables.

Hi,

Here's v2 which disables tests on ecl-special-functions.

The tests hang indefinitely:

https://github.com/Lisp-Stat/special-functions/issues/4

all best,

jgart

---

gnu/packages/lisp-xyz.scm | 32 ++++++++++++++++++++++++++++++++

1 file changed, 32 insertions(+)

Toggle diff (45 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 35e10b3301..2da5f7858a 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26677,6 +26677,38 @@ (define-public cl-variates
 (define-public ecl-cl-variates
   (sbcl-package->ecl-package sbcl-cl-variates))
 
+(define-public sbcl-cephes
+  (let ((commit "d87146fa38c8425ffb5fe425eee5eb3e818bacd4")
+        (revision "0"))
+    (package
+      (name "sbcl-cephes")
+      (version (git-version "1.2" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/cephes.cl")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "09adls1lwwzwm1jmvhf11arwlsy5w0bi2rmniahas824mysv77lr"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+        (list sbcl-cffi))
+      (home-page "https://lisp-stat.github.io/cephes.cl/")
+      (synopsis "Common Lisp wrapper for the Cephes Mathematical Library")
+      (description
+"This package provides a common lisp CFFI wrapper for the SciPy version
+of Cephes special functions.")
+      (license license:ms-pl))))
+
+(define-public cl-cephes
+  (sbcl-package->cl-source-package sbcl-cephes))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-cephes
+  (sbcl-package->ecl-package sbcl-cephes))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 2/8] gnu: Add cl-statistics.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215551.3740-2-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-statistics, sbcl-statistics): New
variables.
---
 gnu/packages/lisp-xyz.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

Toggle diff (52 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 2da5f7858a..b0fa3244d5 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26709,6 +26709,45 @@ (define-public cl-cephes
 #;(define-public ecl-cephes
   (sbcl-package->ecl-package sbcl-cephes))
 
+(define-public sbcl-statistics
+  (let ((commit "94fc87a2bf81355a40ce3730b4ed77710ecfabaf")
+        (revision "0"))
+    (package
+      (name "sbcl-statistics")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/statistics")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0is69w6iwh4hyzc5ndgb3i2331f677sa7kw5wy8pmx6hawbkgyir"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-distributions
+              sbcl-let-plus
+              sbcl-numerical-utilities
+              sbcl-conduit-packages))
+      ;; https://github.com/Lisp-Stat/statistics/issues/2
+      (home-page "https://lisp-stat.dev/docs/")
+      (synopsis "Statistical functions in Common Lisp")
+      (description "This package provides a consolidation of Common
+      Lisp statistics
+libraries.")
+      (license (list license:ms-pl license:expat)))))
+
+(define-public cl-statistics
+  (sbcl-package->cl-source-package sbcl-statistics))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2 
+#;(define-public ecl-statistics
+  (sbcl-package->ecl-package sbcl-statistics))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 3/8] gnu: Add cl-special-functions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215551.3740-3-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-special-functions, ecl-special-functions,
sbcl-special-functions): New variables.
---
 gnu/packages/lisp-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

Toggle diff (53 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index b0fa3244d5..e1b1f74d61 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26748,6 +26748,46 @@ (define-public cl-statistics
 #;(define-public ecl-statistics
   (sbcl-package->ecl-package sbcl-statistics))
 
+(define-public sbcl-special-functions
+  (let ((commit "f3ca2792ff3f8351839c366413da6b1bb2965a58")
+        (revision "0"))
+    (package
+      (name "sbcl-special-functions")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/special-functions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "092szffy7zfxgrvfck11wnj8l0mgcym13yiafj01ad02lbj1fnnv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-cl-variates sbcl-fiveam sbcl-select))
+      (inputs
+        (list sbcl-alexandria-plus
+              sbcl-numerical-utilities
+              sbcl-let-plus
+              sbcl-float-features
+              sbcl-conduit-packages))
+      (home-page "https://lisp-stat.dev/docs/resources/special-functions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "This library implements
+@url{http://specialfunctionswiki.org/index.php/Main_Page, special
+functions} and has a focus on high accuracy double-float calculations
+using the latest algorithms.")
+      (license license:ms-pl))))
+
+(define-public cl-special-functions
+  (sbcl-package->cl-source-package sbcl-special-functions))
+
+(define-public ecl-special-functions
+  (package
+    (inherit (sbcl-package->ecl-package sbcl-special-functions))
+    ;; https://github.com/Lisp-Stat/special-functions/issues/4
+    (arguments (list #:tests? #f))))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 4/8] gnu: Add cl-distributions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215551.3740-4-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-distributions, sbcl-distributions):
New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index e1b1f74d61..77b885adc1 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26788,6 +26788,47 @@ (define-public ecl-special-functions
     ;; https://github.com/Lisp-Stat/special-functions/issues/4
     (arguments (list #:tests? #f))))
 
+(define-public sbcl-distributions
+  (let ((commit "ea72622073ee7e005dfdc621ce1e5a83b22bb39e")
+        (revision "0"))
+    (package
+      (name "sbcl-distributions")
+      (version (git-version "1.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/distributions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1fkzigd0s0s0mvszgmv04yc8jp9gm4812445hfh6kpz6cjy5zpsk"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/distributions/issues/1
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-fiveam))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-array-operations
+              sbcl-cephes
+              sbcl-numerical-utilities
+              sbcl-special-functions
+              sbcl-let-plus
+              sbcl-float-features))
+      (home-page "https://lisp-stat.dev/docs/manuals/distributions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "The Distributions package provides a collection of
+probabilistic distributions and related functions")
+      (license license:ms-pl))))
+
+(define-public cl-distributions
+  (sbcl-package->cl-source-package sbcl-distributions))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-distributions
+  (sbcl-package->ecl-package sbcl-distributions))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 5/8] gnu: Add cl-data-frame.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215551.3740-5-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-data-frame, ecl-data-frame,
sbcl-data-frame): New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 77b885adc1..012ec02030 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26829,6 +26829,47 @@ (define-public cl-distributions
 #;(define-public ecl-distributions
   (sbcl-package->ecl-package sbcl-distributions))
 
+(define-public sbcl-data-frame
+  (let ((commit "6f02e58312654ddf19d686f234dcf699fc4cd0f5")
+        (revision "0"))
+    (package
+      (name "sbcl-data-frame")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/data-frame")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0bs1jh66bml25bj1lxdzz8cjhj3g060yyd5ggqsnsr4l2j0zyszv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-serapeum
+              sbcl-anaphora
+              sbcl-duologue
+              sbcl-statistics
+              sbcl-let-plus
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-numerical-utilities
+              sbcl-select))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Data frames for Common Lisp")
+      (description "This package provides Data frames for Common Lisp, a
+two-dimensional array-like structure in which each column contains values
+of one variable and each row contains one set of values from each column.")
+      (license license:ms-pl))))
+
+(define-public cl-data-frame
+  (sbcl-package->cl-source-package sbcl-data-frame))
+
+(define-public ecl-data-frame
+  (sbcl-package->ecl-package sbcl-data-frame))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 6/8] gnu: Add cl-dfio.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215551.3740-6-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-dfio, sbcl-dfio): New variables.

---

gnu/packages/lisp-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++++

1 file changed, 40 insertions(+)

Toggle diff (53 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 012ec02030..49f3a72cba 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26870,6 +26870,46 @@ (define-public cl-data-frame
 (define-public ecl-data-frame
   (sbcl-package->ecl-package sbcl-data-frame))
 
+(define-public sbcl-dfio
+  (let ((commit "f7984b792bf4d9010083db08472bc84d2d31430c")
+        (revision "0"))
+    (package
+      (name "sbcl-dfio")
+      (version (git-version "0.3.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/dfio")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1wka8y4526x8yy3asiy15jxdzhsmyiq6ra6wbi8a4vcry3g2v9a0"))))
+      (build-system asdf-build-system/sbcl)
+      (arguments '(#:asd-systems '("dfio" "dfio/json" "dfio/tests")))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-data-frame
+              sbcl-yason
+              sbcl-dexador
+              sbcl-fare-csv
+              sbcl-let-plus))
+      (native-inputs
+        (list sbcl-clunit2))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Read data to and from data frames")
+      (description "This package provides tools for manipulating data
+using a data frame.")
+      (license license:ms-pl))))
+
+(define-public cl-dfio
+  (sbcl-package->cl-source-package sbcl-dfio))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-dfio
+  (sbcl-package->ecl-package sbcl-dfio))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 7/8] gnu: Add cl-lisp-stat.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215551.3740-7-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-lisp-stat, sbcl-lisp-stat): New variables.

---

gnu/packages/lisp-xyz.scm | 43 +++++++++++++++++++++++++++++++++++++++

1 file changed, 43 insertions(+)

Toggle diff (56 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 49f3a72cba..344de5f9ec 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26910,6 +26910,49 @@ (define-public cl-dfio
 #;(define-public ecl-dfio
   (sbcl-package->ecl-package sbcl-dfio))
 
+(define-public sbcl-lisp-stat
+  (let ((commit "357a0d2b5f68a5ff925776235c2b7455e12b78ba")
+        (revision "0"))
+    (package
+      (name "sbcl-lisp-stat")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/lisp-stat")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0qwlxrbwj884mr67sf6aj0zwrndv33aiiid4bqrkji41kjhqfcz5"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/lisp-stat/issues/22
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-parachute))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-data-frame
+              sbcl-dfio
+              sbcl-dexador
+              sbcl-distributions
+              sbcl-numerical-utilities
+              sbcl-select
+              sbcl-statistics))
+      (home-page "https://lisp-stat.github.io/lisp-stat")
+      (synopsis "Statistical Computing in Common Lisp")
+      (description "This package provides a statistical computing
+environment for Common Lisp.")
+      (license license:ms-pl))))
+
+(define-public cl-lisp-stat
+  (sbcl-package->cl-source-package sbcl-lisp-stat))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-lisp-stat
+  (sbcl-package->ecl-package sbcl-lisp-stat))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:55

[PATCH v2 8/8] gnu: qutebrowser: Add note to description about font rendering bug.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215551.3740-8-jgart@dismail.de

* gnu/packages/web-browsers.scm (qutebrowser): Add note.
[description]: Add note about font rendering bug.
---
 gnu/packages/web-browsers.scm | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

Toggle diff (19 lines)diff --git a/gnu/packages/web-browsers.scm b/gnu/packages/web-browsers.scm
index a126902395..9903f1f4aa 100644
--- a/gnu/packages/web-browsers.scm
+++ b/gnu/packages/web-browsers.scm
@@ -548,7 +548,11 @@ (define-public qutebrowser
     (home-page "https://qutebrowser.org/")
     (synopsis "Minimal, keyboard-focused, vim-like web browser")
     (description "qutebrowser is a keyboard-focused browser with a minimal
-GUI.  It is based on PyQt5 and QtWebEngine.")
+GUI.  It is based on PyQt5 and QtWebEngine.  Due to a
+@url{https://bugs.chromium.org/p/chromium/issues/detail?id=1164975,
+known bug} in qtwebengine, add @code{c.qt.args =
+['disable-seccomp-filter-sandbox']} to your @file{config.py} in order
+to allow fonts to render properly.")
     (license license:gpl3+)))
 
 (define-public vimb
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 1/8] gnu: Add cl-variates.

Recipients:(address . 60835@debbugs.gnu.org)

Message-ID:20230115215913.3930-1-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-variates, ecl-cl-variates,

sbcl-cl-variates): New variables.

Sorry, I accidentally bunched an unrelated patch in v2. Here's v3.

all best,

jgart

---

gnu/packages/lisp-xyz.scm | 35 ++++++++++++++++++++++++++++++++++-

1 file changed, 34 insertions(+), 1 deletion(-)

Toggle diff (55 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 943d295c5d..35e10b3301 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -28,7 +28,7 @@
 ;;; Copyright © 2021 Cameron Chaparro <cameron@cameronchaparro.com>
 ;;; Copyright © 2021 Charles Jackson <charles.b.jackson@protonmail.com>
 ;;; Copyright © 2021, 2022 Foo Chuan Wei <chuanwei.foo@hotmail.com>
-;;; Copyright © 2021, 2022 jgart <jgart@dismail.de>
+;;; Copyright © 2021, 2022, 2023 jgart <jgart@dismail.de>
 ;;; Copyright © 2021 Aleksandr Vityazev <avityazev@posteo.org>
 ;;; Copyright © 2021 Jacob MacDonald <jaccarmac@gmail.com>
 ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com>
@@ -26644,6 +26644,39 @@ (define-public cl-smug
 (define-public ecl-smug
   (sbcl-package->ecl-package sbcl-smug))
 
+(define-public sbcl-cl-variates
+  (let ((commit "4e7548754d8a8731a42487fae31174db4bf36d47")
+        (revision "0"))
+    (package
+        (name "sbcl-cl-variates")
+        (version "0.9.0")
+        (source
+          (origin
+            (method git-fetch)
+            (uri (git-reference
+                  (url "https://gitlab.common-lisp.net/cl-variates/cl-variates")
+                  (commit commit)))
+            (file-name (git-file-name name version))
+            (sha256
+             (base32 "03wnvfi3yfflpvi0mr732r834msij4vrwdbgf6csh0b8kqxl47zn"))))
+        (build-system asdf-build-system/sbcl)
+        ;; USE-PACKAGE #<PACKAGE "CL-VARIATES"> causes name-conflicts in
+        ;; #<PACKAGE "CL-VARIATES-TEST"> between the following symbols:
+        ;; CL-VARIATES:RANDOM-ELEMENT, LIFT:RANDOM-ELEMENT
+        (arguments (list #:tests? #f))
+        (native-inputs (list sbcl-lift))
+        (home-page "https://gitlab.common-lisp.net/cl-variates/cl-variates")
+        (synopsis "Portable Common Lisp Random Number Generation")
+        (description "The variates package provides portable random number
+    generation as well as numerous distributions.")
+        (license license:expat))))
+
+(define-public cl-variates
+  (sbcl-package->cl-source-package sbcl-cl-variates))
+
+(define-public ecl-cl-variates
+  (sbcl-package->ecl-package sbcl-cl-variates))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 2/8] gnu: Add cl-cephes.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215913.3930-2-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-cephes, sbcl-cephes): New variables.

---

gnu/packages/lisp-xyz.scm | 32 ++++++++++++++++++++++++++++++++

1 file changed, 32 insertions(+)

Toggle diff (45 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 35e10b3301..2da5f7858a 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26677,6 +26677,38 @@ (define-public cl-variates
 (define-public ecl-cl-variates
   (sbcl-package->ecl-package sbcl-cl-variates))
 
+(define-public sbcl-cephes
+  (let ((commit "d87146fa38c8425ffb5fe425eee5eb3e818bacd4")
+        (revision "0"))
+    (package
+      (name "sbcl-cephes")
+      (version (git-version "1.2" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/cephes.cl")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "09adls1lwwzwm1jmvhf11arwlsy5w0bi2rmniahas824mysv77lr"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+        (list sbcl-cffi))
+      (home-page "https://lisp-stat.github.io/cephes.cl/")
+      (synopsis "Common Lisp wrapper for the Cephes Mathematical Library")
+      (description
+"This package provides a common lisp CFFI wrapper for the SciPy version
+of Cephes special functions.")
+      (license license:ms-pl))))
+
+(define-public cl-cephes
+  (sbcl-package->cl-source-package sbcl-cephes))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-cephes
+  (sbcl-package->ecl-package sbcl-cephes))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 3/8] gnu: Add cl-statistics.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215913.3930-3-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-statistics, sbcl-statistics): New
variables.
---
 gnu/packages/lisp-xyz.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

Toggle diff (52 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 2da5f7858a..b0fa3244d5 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26709,6 +26709,45 @@ (define-public cl-cephes
 #;(define-public ecl-cephes
   (sbcl-package->ecl-package sbcl-cephes))
 
+(define-public sbcl-statistics
+  (let ((commit "94fc87a2bf81355a40ce3730b4ed77710ecfabaf")
+        (revision "0"))
+    (package
+      (name "sbcl-statistics")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/statistics")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0is69w6iwh4hyzc5ndgb3i2331f677sa7kw5wy8pmx6hawbkgyir"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-distributions
+              sbcl-let-plus
+              sbcl-numerical-utilities
+              sbcl-conduit-packages))
+      ;; https://github.com/Lisp-Stat/statistics/issues/2
+      (home-page "https://lisp-stat.dev/docs/")
+      (synopsis "Statistical functions in Common Lisp")
+      (description "This package provides a consolidation of Common
+      Lisp statistics
+libraries.")
+      (license (list license:ms-pl license:expat)))))
+
+(define-public cl-statistics
+  (sbcl-package->cl-source-package sbcl-statistics))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2 
+#;(define-public ecl-statistics
+  (sbcl-package->ecl-package sbcl-statistics))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 4/8] gnu: Add cl-special-functions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215913.3930-4-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-special-functions, ecl-special-functions,
sbcl-special-functions): New variables.
---
 gnu/packages/lisp-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

Toggle diff (53 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index b0fa3244d5..e1b1f74d61 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26748,6 +26748,46 @@ (define-public cl-statistics
 #;(define-public ecl-statistics
   (sbcl-package->ecl-package sbcl-statistics))
 
+(define-public sbcl-special-functions
+  (let ((commit "f3ca2792ff3f8351839c366413da6b1bb2965a58")
+        (revision "0"))
+    (package
+      (name "sbcl-special-functions")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/special-functions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "092szffy7zfxgrvfck11wnj8l0mgcym13yiafj01ad02lbj1fnnv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-cl-variates sbcl-fiveam sbcl-select))
+      (inputs
+        (list sbcl-alexandria-plus
+              sbcl-numerical-utilities
+              sbcl-let-plus
+              sbcl-float-features
+              sbcl-conduit-packages))
+      (home-page "https://lisp-stat.dev/docs/resources/special-functions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "This library implements
+@url{http://specialfunctionswiki.org/index.php/Main_Page, special
+functions} and has a focus on high accuracy double-float calculations
+using the latest algorithms.")
+      (license license:ms-pl))))
+
+(define-public cl-special-functions
+  (sbcl-package->cl-source-package sbcl-special-functions))
+
+(define-public ecl-special-functions
+  (package
+    (inherit (sbcl-package->ecl-package sbcl-special-functions))
+    ;; https://github.com/Lisp-Stat/special-functions/issues/4
+    (arguments (list #:tests? #f))))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 5/8] gnu: Add cl-distributions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215913.3930-5-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-distributions, sbcl-distributions):
New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index e1b1f74d61..77b885adc1 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26788,6 +26788,47 @@ (define-public ecl-special-functions
     ;; https://github.com/Lisp-Stat/special-functions/issues/4
     (arguments (list #:tests? #f))))
 
+(define-public sbcl-distributions
+  (let ((commit "ea72622073ee7e005dfdc621ce1e5a83b22bb39e")
+        (revision "0"))
+    (package
+      (name "sbcl-distributions")
+      (version (git-version "1.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/distributions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1fkzigd0s0s0mvszgmv04yc8jp9gm4812445hfh6kpz6cjy5zpsk"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/distributions/issues/1
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-fiveam))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-array-operations
+              sbcl-cephes
+              sbcl-numerical-utilities
+              sbcl-special-functions
+              sbcl-let-plus
+              sbcl-float-features))
+      (home-page "https://lisp-stat.dev/docs/manuals/distributions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "The Distributions package provides a collection of
+probabilistic distributions and related functions")
+      (license license:ms-pl))))
+
+(define-public cl-distributions
+  (sbcl-package->cl-source-package sbcl-distributions))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-distributions
+  (sbcl-package->ecl-package sbcl-distributions))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 6/8] gnu: Add cl-data-frame.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215913.3930-6-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-data-frame, ecl-data-frame,
sbcl-data-frame): New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 77b885adc1..012ec02030 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26829,6 +26829,47 @@ (define-public cl-distributions
 #;(define-public ecl-distributions
   (sbcl-package->ecl-package sbcl-distributions))
 
+(define-public sbcl-data-frame
+  (let ((commit "6f02e58312654ddf19d686f234dcf699fc4cd0f5")
+        (revision "0"))
+    (package
+      (name "sbcl-data-frame")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/data-frame")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0bs1jh66bml25bj1lxdzz8cjhj3g060yyd5ggqsnsr4l2j0zyszv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-serapeum
+              sbcl-anaphora
+              sbcl-duologue
+              sbcl-statistics
+              sbcl-let-plus
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-numerical-utilities
+              sbcl-select))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Data frames for Common Lisp")
+      (description "This package provides Data frames for Common Lisp, a
+two-dimensional array-like structure in which each column contains values
+of one variable and each row contains one set of values from each column.")
+      (license license:ms-pl))))
+
+(define-public cl-data-frame
+  (sbcl-package->cl-source-package sbcl-data-frame))
+
+(define-public ecl-data-frame
+  (sbcl-package->ecl-package sbcl-data-frame))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 7/8] gnu: Add cl-dfio.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215913.3930-7-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-dfio, sbcl-dfio): New variables.

---

gnu/packages/lisp-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++++

1 file changed, 40 insertions(+)

Toggle diff (53 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 012ec02030..49f3a72cba 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26870,6 +26870,46 @@ (define-public cl-data-frame
 (define-public ecl-data-frame
   (sbcl-package->ecl-package sbcl-data-frame))
 
+(define-public sbcl-dfio
+  (let ((commit "f7984b792bf4d9010083db08472bc84d2d31430c")
+        (revision "0"))
+    (package
+      (name "sbcl-dfio")
+      (version (git-version "0.3.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/dfio")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1wka8y4526x8yy3asiy15jxdzhsmyiq6ra6wbi8a4vcry3g2v9a0"))))
+      (build-system asdf-build-system/sbcl)
+      (arguments '(#:asd-systems '("dfio" "dfio/json" "dfio/tests")))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-data-frame
+              sbcl-yason
+              sbcl-dexador
+              sbcl-fare-csv
+              sbcl-let-plus))
+      (native-inputs
+        (list sbcl-clunit2))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Read data to and from data frames")
+      (description "This package provides tools for manipulating data
+using a data frame.")
+      (license license:ms-pl))))
+
+(define-public cl-dfio
+  (sbcl-package->cl-source-package sbcl-dfio))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-dfio
+  (sbcl-package->ecl-package sbcl-dfio))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 15 Jan 2023 22:59

[PATCH v3 8/8] gnu: Add cl-lisp-stat.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230115215913.3930-8-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-lisp-stat, sbcl-lisp-stat): New variables.

---

gnu/packages/lisp-xyz.scm | 43 +++++++++++++++++++++++++++++++++++++++

1 file changed, 43 insertions(+)

Toggle diff (56 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 49f3a72cba..344de5f9ec 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26910,6 +26910,49 @@ (define-public cl-dfio
 #;(define-public ecl-dfio
   (sbcl-package->ecl-package sbcl-dfio))
 
+(define-public sbcl-lisp-stat
+  (let ((commit "357a0d2b5f68a5ff925776235c2b7455e12b78ba")
+        (revision "0"))
+    (package
+      (name "sbcl-lisp-stat")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/lisp-stat")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0qwlxrbwj884mr67sf6aj0zwrndv33aiiid4bqrkji41kjhqfcz5"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/lisp-stat/issues/22
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-parachute))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-data-frame
+              sbcl-dfio
+              sbcl-dexador
+              sbcl-distributions
+              sbcl-numerical-utilities
+              sbcl-select
+              sbcl-statistics))
+      (home-page "https://lisp-stat.github.io/lisp-stat")
+      (synopsis "Statistical Computing in Common Lisp")
+      (description "This package provides a statistical computing
+environment for Common Lisp.")
+      (license license:ms-pl))))
+
+(define-public cl-lisp-stat
+  (sbcl-package->cl-source-package sbcl-lisp-stat))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-lisp-stat
+  (sbcl-package->ecl-package sbcl-lisp-stat))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

Guillaume Le Vaillant wrote on 18 Jan 2023 14:08

Re: [PATCH v3 1/8] gnu: Add cl-variates.

Recipients:(name . jgart)(address . jgart@dismail.de)(address . 60835@debbugs.gnu.org)

Message-ID:87pmbc0yt8.fsf@kitej

Hi,
The patches don't apply cleanly; it looks like they are based on
a custom branch (the sbcl-seria package at the end of the patches'
context is not in Guix).
Could you send an updated patch series rebased on the master branch?
Thanks.

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jgart wrote on 19 Jan 2023 00:15

[PATCH v4 1/8] gnu: Add cl-variates.

Recipients:(address . 60835@debbugs.gnu.org)

Message-ID:20230118231548.4609-1-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-variates, ecl-cl-variates,

sbcl-cl-variates): New variables.

Hi Guillaume, thanks for the review.

Here is version 4 of the patch set rebased against the latest master commit as of now.

all best,

jgart

---

gnu/packages/lisp-xyz.scm | 35 ++++++++++++++++++++++++++++++++++-

1 file changed, 34 insertions(+), 1 deletion(-)

Toggle diff (55 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 58fbef1900..cf8b3f63ae 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -28,7 +28,7 @@
 ;;; Copyright © 2021 Cameron Chaparro <cameron@cameronchaparro.com>
 ;;; Copyright © 2021 Charles Jackson <charles.b.jackson@protonmail.com>
 ;;; Copyright © 2021, 2022 Foo Chuan Wei <chuanwei.foo@hotmail.com>
-;;; Copyright © 2021, 2022 jgart <jgart@dismail.de>
+;;; Copyright © 2021, 2022, 2023 jgart <jgart@dismail.de>
 ;;; Copyright © 2021 Aleksandr Vityazev <avityazev@posteo.org>
 ;;; Copyright © 2021 Jacob MacDonald <jaccarmac@gmail.com>
 ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com>
@@ -26702,6 +26702,39 @@ (define-public cl-smug
 (define-public ecl-smug
   (sbcl-package->ecl-package sbcl-smug))
 
+(define-public sbcl-cl-variates
+  (let ((commit "4e7548754d8a8731a42487fae31174db4bf36d47")
+        (revision "0"))
+    (package
+        (name "sbcl-cl-variates")
+        (version "0.9.0")
+        (source
+          (origin
+            (method git-fetch)
+            (uri (git-reference
+                  (url "https://gitlab.common-lisp.net/cl-variates/cl-variates")
+                  (commit commit)))
+            (file-name (git-file-name name version))
+            (sha256
+             (base32 "03wnvfi3yfflpvi0mr732r834msij4vrwdbgf6csh0b8kqxl47zn"))))
+        (build-system asdf-build-system/sbcl)
+        ;; USE-PACKAGE #<PACKAGE "CL-VARIATES"> causes name-conflicts in
+        ;; #<PACKAGE "CL-VARIATES-TEST"> between the following symbols:
+        ;; CL-VARIATES:RANDOM-ELEMENT, LIFT:RANDOM-ELEMENT
+        (arguments (list #:tests? #f))
+        (native-inputs (list sbcl-lift))
+        (home-page "https://gitlab.common-lisp.net/cl-variates/cl-variates")
+        (synopsis "Portable Common Lisp Random Number Generation")
+        (description "The variates package provides portable random number
+    generation as well as numerous distributions.")
+        (license license:expat))))
+
+(define-public cl-variates
+  (sbcl-package->cl-source-package sbcl-cl-variates))
+
+(define-public ecl-cl-variates
+  (sbcl-package->ecl-package sbcl-cl-variates))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 19 Jan 2023 00:15

[PATCH v4 2/8] gnu: Add cl-cephes.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230118231548.4609-2-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-cephes, sbcl-cephes): New variables.

---

gnu/packages/lisp-xyz.scm | 32 ++++++++++++++++++++++++++++++++

1 file changed, 32 insertions(+)

Toggle diff (45 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index cf8b3f63ae..90385e115a 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26735,6 +26735,38 @@ (define-public cl-variates
 (define-public ecl-cl-variates
   (sbcl-package->ecl-package sbcl-cl-variates))
 
+(define-public sbcl-cephes
+  (let ((commit "d87146fa38c8425ffb5fe425eee5eb3e818bacd4")
+        (revision "0"))
+    (package
+      (name "sbcl-cephes")
+      (version (git-version "1.2" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/cephes.cl")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "09adls1lwwzwm1jmvhf11arwlsy5w0bi2rmniahas824mysv77lr"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+        (list sbcl-cffi))
+      (home-page "https://lisp-stat.github.io/cephes.cl/")
+      (synopsis "Common Lisp wrapper for the Cephes Mathematical Library")
+      (description
+"This package provides a common lisp CFFI wrapper for the SciPy version
+of Cephes special functions.")
+      (license license:ms-pl))))
+
+(define-public cl-cephes
+  (sbcl-package->cl-source-package sbcl-cephes))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-cephes
+  (sbcl-package->ecl-package sbcl-cephes))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 19 Jan 2023 00:15

[PATCH v4 3/8] gnu: Add cl-statistics.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230118231548.4609-3-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-statistics, sbcl-statistics): New
variables.
---
 gnu/packages/lisp-xyz.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

Toggle diff (52 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 90385e115a..ff5c8a10e8 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26767,6 +26767,45 @@ (define-public cl-cephes
 #;(define-public ecl-cephes
   (sbcl-package->ecl-package sbcl-cephes))
 
+(define-public sbcl-statistics
+  (let ((commit "94fc87a2bf81355a40ce3730b4ed77710ecfabaf")
+        (revision "0"))
+    (package
+      (name "sbcl-statistics")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/statistics")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0is69w6iwh4hyzc5ndgb3i2331f677sa7kw5wy8pmx6hawbkgyir"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-distributions
+              sbcl-let-plus
+              sbcl-numerical-utilities
+              sbcl-conduit-packages))
+      ;; https://github.com/Lisp-Stat/statistics/issues/2
+      (home-page "https://lisp-stat.dev/docs/")
+      (synopsis "Statistical functions in Common Lisp")
+      (description "This package provides a consolidation of Common
+      Lisp statistics
+libraries.")
+      (license (list license:ms-pl license:expat)))))
+
+(define-public cl-statistics
+  (sbcl-package->cl-source-package sbcl-statistics))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2 
+#;(define-public ecl-statistics
+  (sbcl-package->ecl-package sbcl-statistics))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 19 Jan 2023 00:15

[PATCH v4 4/8] gnu: Add cl-special-functions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230118231548.4609-4-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-special-functions, ecl-special-functions,
sbcl-special-functions): New variables.
---
 gnu/packages/lisp-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

Toggle diff (53 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index ff5c8a10e8..c27e3e1650 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26806,6 +26806,46 @@ (define-public cl-statistics
 #;(define-public ecl-statistics
   (sbcl-package->ecl-package sbcl-statistics))
 
+(define-public sbcl-special-functions
+  (let ((commit "f3ca2792ff3f8351839c366413da6b1bb2965a58")
+        (revision "0"))
+    (package
+      (name "sbcl-special-functions")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/special-functions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "092szffy7zfxgrvfck11wnj8l0mgcym13yiafj01ad02lbj1fnnv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-cl-variates sbcl-fiveam sbcl-select))
+      (inputs
+        (list sbcl-alexandria-plus
+              sbcl-numerical-utilities
+              sbcl-let-plus
+              sbcl-float-features
+              sbcl-conduit-packages))
+      (home-page "https://lisp-stat.dev/docs/resources/special-functions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "This library implements
+@url{http://specialfunctionswiki.org/index.php/Main_Page, special
+functions} and has a focus on high accuracy double-float calculations
+using the latest algorithms.")
+      (license license:ms-pl))))
+
+(define-public cl-special-functions
+  (sbcl-package->cl-source-package sbcl-special-functions))
+
+(define-public ecl-special-functions
+  (package
+    (inherit (sbcl-package->ecl-package sbcl-special-functions))
+    ;; https://github.com/Lisp-Stat/special-functions/issues/4
+    (arguments (list #:tests? #f))))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 19 Jan 2023 00:15

[PATCH v4 5/8] gnu: Add cl-distributions.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230118231548.4609-5-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-distributions, sbcl-distributions):
New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index c27e3e1650..a974958a83 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26846,6 +26846,47 @@ (define-public ecl-special-functions
     ;; https://github.com/Lisp-Stat/special-functions/issues/4
     (arguments (list #:tests? #f))))
 
+(define-public sbcl-distributions
+  (let ((commit "ea72622073ee7e005dfdc621ce1e5a83b22bb39e")
+        (revision "0"))
+    (package
+      (name "sbcl-distributions")
+      (version (git-version "1.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/distributions")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1fkzigd0s0s0mvszgmv04yc8jp9gm4812445hfh6kpz6cjy5zpsk"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/distributions/issues/1
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-fiveam))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-array-operations
+              sbcl-cephes
+              sbcl-numerical-utilities
+              sbcl-special-functions
+              sbcl-let-plus
+              sbcl-float-features))
+      (home-page "https://lisp-stat.dev/docs/manuals/distributions/")
+      (synopsis "Random variates for Common Lisp")
+      (description "The Distributions package provides a collection of
+probabilistic distributions and related functions")
+      (license license:ms-pl))))
+
+(define-public cl-distributions
+  (sbcl-package->cl-source-package sbcl-distributions))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-distributions
+  (sbcl-package->ecl-package sbcl-distributions))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 19 Jan 2023 00:15

[PATCH v4 6/8] gnu: Add cl-data-frame.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230118231548.4609-6-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-data-frame, ecl-data-frame,
sbcl-data-frame): New variables.
---
 gnu/packages/lisp-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Toggle diff (54 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index a974958a83..cffef574a8 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26887,6 +26887,47 @@ (define-public cl-distributions
 #;(define-public ecl-distributions
   (sbcl-package->ecl-package sbcl-distributions))
 
+(define-public sbcl-data-frame
+  (let ((commit "6f02e58312654ddf19d686f234dcf699fc4cd0f5")
+        (revision "0"))
+    (package
+      (name "sbcl-data-frame")
+      (version (git-version "1.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/data-frame")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0bs1jh66bml25bj1lxdzz8cjhj3g060yyd5ggqsnsr4l2j0zyszv"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs (list sbcl-clunit2))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-serapeum
+              sbcl-anaphora
+              sbcl-duologue
+              sbcl-statistics
+              sbcl-let-plus
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-numerical-utilities
+              sbcl-select))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Data frames for Common Lisp")
+      (description "This package provides Data frames for Common Lisp, a
+two-dimensional array-like structure in which each column contains values
+of one variable and each row contains one set of values from each column.")
+      (license license:ms-pl))))
+
+(define-public cl-data-frame
+  (sbcl-package->cl-source-package sbcl-data-frame))
+
+(define-public ecl-data-frame
+  (sbcl-package->ecl-package sbcl-data-frame))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 19 Jan 2023 00:15

[PATCH v4 7/8] gnu: Add cl-dfio.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230118231548.4609-7-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-dfio, sbcl-dfio): New variables.

---

gnu/packages/lisp-xyz.scm | 40 +++++++++++++++++++++++++++++++++++++++

1 file changed, 40 insertions(+)

Toggle diff (53 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index cffef574a8..1a3c7dd3ff 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26928,6 +26928,46 @@ (define-public cl-data-frame
 (define-public ecl-data-frame
   (sbcl-package->ecl-package sbcl-data-frame))
 
+(define-public sbcl-dfio
+  (let ((commit "f7984b792bf4d9010083db08472bc84d2d31430c")
+        (revision "0"))
+    (package
+      (name "sbcl-dfio")
+      (version (git-version "0.3.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/dfio")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1wka8y4526x8yy3asiy15jxdzhsmyiq6ra6wbi8a4vcry3g2v9a0"))))
+      (build-system asdf-build-system/sbcl)
+      (arguments '(#:asd-systems '("dfio" "dfio/json" "dfio/tests")))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-anaphora
+              sbcl-data-frame
+              sbcl-yason
+              sbcl-dexador
+              sbcl-fare-csv
+              sbcl-let-plus))
+      (native-inputs
+        (list sbcl-clunit2))
+      (home-page "https://lisp-stat.dev/docs/manuals/data-frame/")
+      (synopsis "Read data to and from data frames")
+      (description "This package provides tools for manipulating data
+using a data frame.")
+      (license license:ms-pl))))
+
+(define-public cl-dfio
+  (sbcl-package->cl-source-package sbcl-dfio))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-dfio
+  (sbcl-package->ecl-package sbcl-dfio))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

jgart wrote on 19 Jan 2023 00:15

[PATCH v4 8/8] gnu: Add cl-lisp-stat.

Recipients:(address . 60835@debbugs.gnu.org)(name . jgart)(address . jgart@dismail.de)

Message-ID:20230118231548.4609-8-jgart@dismail.de

* gnu/packages/lisp-xyz.scm (cl-lisp-stat, sbcl-lisp-stat): New variables.

---

gnu/packages/lisp-xyz.scm | 43 +++++++++++++++++++++++++++++++++++++++

1 file changed, 43 insertions(+)

Toggle diff (56 lines)diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 1a3c7dd3ff..27ab680352 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -26968,6 +26968,49 @@ (define-public cl-dfio
 #;(define-public ecl-dfio
   (sbcl-package->ecl-package sbcl-dfio))
 
+(define-public sbcl-lisp-stat
+  (let ((commit "357a0d2b5f68a5ff925776235c2b7455e12b78ba")
+        (revision "0"))
+    (package
+      (name "sbcl-lisp-stat")
+      (version (git-version "1.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Lisp-Stat/lisp-stat")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0qwlxrbwj884mr67sf6aj0zwrndv33aiiid4bqrkji41kjhqfcz5"))))
+      (build-system asdf-build-system/sbcl)
+      ;; https://github.com/Lisp-Stat/lisp-stat/issues/22
+      (arguments (list #:tests? #f))
+      (native-inputs (list sbcl-parachute))
+      (inputs
+        (list sbcl-alexandria
+              sbcl-alexandria-plus
+              sbcl-array-operations
+              sbcl-data-frame
+              sbcl-dfio
+              sbcl-dexador
+              sbcl-distributions
+              sbcl-numerical-utilities
+              sbcl-select
+              sbcl-statistics))
+      (home-page "https://lisp-stat.github.io/lisp-stat")
+      (synopsis "Statistical Computing in Common Lisp")
+      (description "This package provides a statistical computing
+environment for Common Lisp.")
+      (license license:ms-pl))))
+
+(define-public cl-lisp-stat
+  (sbcl-package->cl-source-package sbcl-lisp-stat))
+
+;; https://github.com/Lisp-Stat/cephes.cl/issues/2
+#;(define-public ecl-lisp-stat
+  (sbcl-package->ecl-package sbcl-lisp-stat))
+
 (define-public sbcl-seria
   (let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")
         (revision "0"))
-- 
2.38.1

Guillaume Le Vaillant wrote on 20 Jan 2023 19:36

Re: [PATCH v4 1/8] gnu: Add cl-variates.

Recipients:(name . jgart)(address . jgart@dismail.de)(address . 60835@debbugs.gnu.org)

Message-ID:87ilh159pz.fsf@kitej

jgart <jgart@dismail.de> skribis:

Toggle quote (7 lines)

> * gnu/packages/lisp-xyz.scm (cl-variates, ecl-cl-variates,

> sbcl-cl-variates): New variables.

> Hi Guillaume, thanks for the review.

> Here is version 4 of the patch set rebased against the latest master commit as of now.

Hi,

It looks like the patches are still based on a different branch.

They end with:

Toggle snippet (6 lines)

(define-public sbcl-seria

(let ((commit "2bba04dc6abdc0b85a511cae9c460942e2ad305a")

(revision "0"))

whereas if they were based on the master branch they would end with:

Toggle snippet (6 lines)

;;;

;;; Avoid adding new packages to the end of this file. To reduce the chances

;;; of a merge conflict, place them above by existing packages with similar

What git command did you use to make the patch series?

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jgart wrote on 31 Jan 2023 03:16

Re: [PATCH 0/5] Lisp-Stat

Recipients:(address . 60835@debbugs.gnu.org)(name . Guillaume Le Vaillant)(address . glv@posteo.net)

Message-ID:eec6ee88b5bb333a125f9ae5cc2dc6db@dismail.de

hmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmm

I took that patch from master, I'm pretty sure ;()

What is the error that you get when you try to apply the patch series?

all best,

jgart

Guillaume Le Vaillant wrote on 1 Feb 2023 15:32

Recipients:(name . jgart)(address . jgart@dismail.de)(address . 60835@debbugs.gnu.org)

Message-ID:87mt5xla8c.fsf@kitej

"jgart" <jgart@dismail.de> skribis:

Toggle quote (4 lines)

> hmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmmm

> I took that patch from master, I'm pretty sure ;()

According to the patches you sent, the branch they are based on has

a sbcl-seria package near the end of "lisp-xyz.scm", but the master

branch of Guix doesn't.

Toggle quote (2 lines)

> What is the error that you get when you try to apply the patch series?

When trying to apply the patches I get error messages such as:

Toggle snippet (5 lines)

Applying: gnu: Add cl-variates.

error: patch failed: gnu/packages/lisp-xyz.scm:26702

error: gnu/packages/lisp-xyz.scm: patch does not apply

Patch failed at 0001 gnu: Add cl-variates.

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/kfkTfsA/0Yi+Vw6QS8V33P6q04s9DQ9+2vET0Q1b9zsN2Eyx9LZ

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Guillaume Le Vaillant wrote on 17 Feb 2023 19:20

Recipients:(name . jgart)(address . jgart@dismail.de)(address . 60835-done@debbugs.gnu.org)

Message-ID:87cz68p2vu.fsf@kitej

I applied the patches using manual copy/paste/fix, and pushed them as

5302cfab43ed5e1b9f41a00663564dabb35503d2 and following.

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Closed

jgart wrote on 17 Feb 2023 23:09

Recipients:(name . Guillaume Le Vaillant)(address . glv@posteo.net)(address . 60835-done@debbugs.gnu.org)

Message-ID:73b25a2ca1ff038271db42e8a15a160c@dismail.de

Hi Guillaume,

Toggle quote (2 lines)

> I applied the patches using manual copy/paste/fix, and pushed them as

Sorry I couldn't get to them in time! I've been traveling since the start of February and haven't had the time.

It is much appreciated that you applied them.

Thank you!

jgart

Closed

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