Mădălin Ionel Patrașcu wrote 2 years ago
(address . guix-patches@gnu.org)
20221129080056.16623-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-metaneighbor): New variable.
---
gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
Toggle diff (51 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 39c9c6f809..c3e0548b45 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6010,6 +6010,42 @@ (define-public r-made4
datasets (coinertia analysis).")
(license license:artistic2.0)))
+(define-public r-metaneighbor
+ (package
+ (name "r-metaneighbor")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MetaNeighbor" version))
+ (sha256
+ (base32
+ "1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"))))
+ (properties `((upstream-name . "MetaNeighbor")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-beanplot
+ r-dplyr
+ r-ggplot2
+ r-gplots
+ r-igraph
+ r-matrix
+ r-matrixstats
+ r-rcolorbrewer
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/MetaNeighbor")
+ (synopsis "Single cell replicability analysis")
+ (description
+ "This package implements a method to rapidly assess cell type identity using
+both functional and random gene sets and it allows users to quantify cell type
+replicability across datasets using neighbor voting. @code{MetaNeighbor} works
+on the basis that cells of the same type should have more similar gene expression
+profiles than cells of different types.")
+ (license license:expat)))
+
(define-public r-methylkit
(package
(name "r-methylkit")
base-commit: 3578fb1323db3f0eadd5749e51095e5f196d78c7
--
2.38.1