Mădălin Ionel Patrașcu wrote 2 years ago
(address . guix-patches@gnu.org)
20221014172728.3982-1-madalinionel.patrascu@mdc-berlin.de
X-Debbugs-Cc: rekado@elephly.net
* gnu/packages/bioconductor.scm (r-macrophage): New variable.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
Toggle diff (38 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ecb60f2e24..3692bb94af 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1384,6 +1384,29 @@ (define-public r-genomationdata
downloaded from Encode.")
(license license:gpl3+)))
+(define-public r-macrophage
+ (package
+ (name "r-macrophage")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "macrophage" version
+ 'experiment))
+ (sha256
+ (base32
+ "0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms"))))
+ (properties `((upstream-name . "macrophage")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/macrophage")
+ (synopsis "Human macrophage immune response data")
+ (description
+ "This package provides the output of running @code{Salmon} on a set of 24
+RNA-seq samples from Alasoo, et al. \"Shared genetic effects on chromatin and
+gene expression indicate a role for enhancer priming in immune response\", published
+in Nature Genetics, January 2018.")
+ (license license:gpl2+)))
+
(define-public r-msdata
(package
(name "r-msdata")
base-commit: 10d429f2fce321d8285684503094694ec3979865
--
2.37.3