Mădălin Ionel Patrașcu wrote 2 years ago
(address . guix-patches@gnu.org)
20221014111216.1389-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-tximportdata): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
Toggle diff (39 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ecb60f2e24..bfb773672b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1605,6 +1605,30 @@ (define-public r-tcgabiolinksgui-data
TCGAbiolinksGUI package.")
(license license:gpl3)))
+(define-public r-tximportdata
+ (package
+ (name "r-tximportdata")
+ (version "1.24.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "tximportData" version
+ 'experiment))
+ (sha256
+ (base32
+ "0mgbwpybg2xd6x1ijrflmjh5w63qz6ylnzszbbyp437n618m7riy"))))
+ (properties `((upstream-name . "tximportData")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/tximportData")
+ (synopsis "Data for the tximport package")
+ (description
+ "This package provides the output of running various transcript abundance
+quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The
+quantifiers were @code{Cufflinks}, @code{RSEM}, @code{kallisto}, @code{Salmon}
+and @code{Sailfish}. @code{alevin} example output is also included.")
+ (license license:gpl2+)))
+
+
;;; Packages
base-commit: 10d429f2fce321d8285684503094694ec3979865
--
2.37.3