MadalinIonel.Patrascu@mdc-berlin.de wrote 2 years ago
(name . guix-patches@gnu.org)(address . guix-patches@gnu.org)
750822584c9b40bf8bbd7e72a215e9ac@mdc-berlin.de
gnu: Add python-mdurl, python-markdown-it-py, python-mdit-py-plugins, python-sphinx-gallery-0.7.0 and python-jupytext.
- Done
Details
- 3 participants
- MadalinIonel.Patrascu@mdc-berlin.de
- Mădălin Ionel Patrașcu
- Ricardo Wurmus
- Owner
- unassigned
- Submitted by
- MadalinIonel.Patrascu@mdc-berlin.de
- Severity
- normal
Mădălin Ionel Patrașcu wrote 2 years ago
[PATCH 4/5] gnu: Add python-sphinx-gallery-0.7.0. X-Debbugs-Cc: rekado@elephly.net
(address . 58490@debbugs.gnu.org)
20221013114006.9513-4-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/sphinx.scm (python-sphinx-gallery-0.7.0): New variable.
---
gnu/packages/sphinx.scm | 18 ++++++++++++++++++
1 file changed, 18 insertions(+)
Toggle diff (38 lines)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 2d53b7f3ac..fddeeb96c6 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -18,6 +18,7 @@
;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2021 Hugo Lecomte <hugo.lecomte@inria.fr>
;;; Copyright © 2021, 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -549,6 +550,23 @@ (define-public python-sphinx-gallery
from any set of Python scripts and puts it into an examples gallery.")
(license license:bsd-3)))
+(define-public python-sphinx-gallery-0.7.0
+ (package (inherit python-sphinx-gallery)
+ (version "0.7.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "sphinx-gallery" version))
+ (sha256
+ (base32
+ "10255yyj7104ad6cibkmrwfpfgkl5675jfn3hd0sn63pjhndgsh5"))))
+ (build-system python-build-system)
+ (arguments `())
+ (native-inputs
+ (list python-pytest
+ python-numpy))
+ (propagated-inputs (list python-sphinx))))
+
+
(define-public python-sphinx-me
(package
(name "python-sphinx-me")
--
2.37.3
Mădălin Ionel Patrașcu wrote 2 years ago
[PATCH 1/5] gnu: Add python-mdurl. X-Debbugs-Cc: rekado@elephly.net
(address . 58490@debbugs.gnu.org)
20221013114006.9513-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/python-xyz.scm (python-mdurl): New variable.
---
gnu/packages/python-xyz.scm | 38 ++++++++++++++++++++++++++++++++++++-
1 file changed, 37 insertions(+), 1 deletion(-)
Toggle diff (60 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 8575d4a67e..b95d598c07 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -66,7 +66,7 @@
;;; Copyright © 2019, 2020, 2021 Giacomo Leidi <goodoldpaul@autistici.org>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2019, 2020, 2021, 2022 Tanguy Le Carrour <tanguy@bioneland.org>
-;;; Copyright © 2019, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2019, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020 Riku Viitanen <riku.viitanen@protonmail.com>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2020 sirgazil <sirgazil@zoho.com>
@@ -625,6 +625,42 @@ (define-public python-lunr
that best match text queries.")
(license license:expat)))
+(define-public python-mdurl
+ (package
+ (name "python-mdurl")
+ (version "0.1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "mdurl" version))
+ (sha256
+ (base32
+ "1fn1hy35h9grggwqax90zcb52inlfxrxsm27vlqqz8zfyllkshdv"))))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:tests? #f ;pypi source does not contains tests
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'build
+ (lambda _
+ (invoke "flit" "build")))
+ (replace 'install
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (add-installed-pythonpath inputs outputs)
+ (for-each
+ (lambda (wheel)
+ (format #t wheel)
+ (invoke "python" "-m" "pip" "install"
+ wheel (string-append "--prefix=" #$output)))
+ (find-files "dist" "\\.whl$")))))))
+ (native-inputs (list python-flit))
+ (home-page "https://github.com/executablebooks/mdurl")
+ (synopsis "Markdown URL utilities")
+ (description
+ "This package implements a @code{Python} port of the @code{JavaScript}
+@code{mdurl}.")
+ (license license:expat)))
+
(define-public python-mrkd
(package
(name "python-mrkd")
base-commit: 9ed65e6af77893b658a7159b091b5002892c2f95
--
2.37.3
Mădălin Ionel Patrașcu wrote 2 years ago
[PATCH 2/5] gnu: Add python-markdown-it-py. X-Debbugs-Cc: rekado@elephly.net
(address . 58490@debbugs.gnu.org)
20221013114006.9513-2-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/python-xyz.scm (python-markdown-it-py): New variable.
---
gnu/packages/python-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
Toggle diff (54 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b95d598c07..33b6c62346 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4017,6 +4017,47 @@ (define-public python-virtualenv
"Virtualenv is a tool to create isolated Python environments.")
(license license:expat)))
+(define-public python-markdown-it-py
+ (package
+ (name "python-markdown-it-py")
+ (version "2.1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "markdown-it-py" version))
+ (sha256
+ (base32
+ "1nh75i72584r70alhqc479gys04s5m5g3vq601yf2njbs7z5jzng"))))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:tests? #f ;;pypi source does not contains tests
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'build
+ (lambda _
+ (invoke "flit" "build")))
+ (replace 'install
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (add-installed-pythonpath inputs outputs)
+ (for-each
+ (lambda (wheel)
+ (format #t wheel)
+ (invoke "python" "-m" "pip" "install"
+ wheel (string-append "--prefix=" #$output)))
+ (find-files "dist" "\\.whl$")))))))
+ (native-inputs (list python-flit))
+ (propagated-inputs
+ (list python-mdurl
+ python-typing-extensions))
+ (home-page "https://github.com/executablebooks/markdown-it-py")
+ (synopsis "Python port of markdown-it")
+ (description
+ "This is a @code{Python} port of the well used @code{markdown-it}, and some
+of its associated plugins. The driving design philosophy of the port has been
+to change as little of the fundamental code structure (file names, function name,
+etc) as possible.")
+ (license license:expat)))
+
(define-public python-markupsafe
(package
(name "python-markupsafe")
--
2.37.3
Mădălin Ionel Patrașcu wrote 2 years ago
[PATCH 5/5] gnu: Add python-jupytext. X-Debbugs-Cc: rekado@elephly.net
(address . 58490@debbugs.gnu.org)
20221013114006.9513-5-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/python-xyz.scm (python-jupytext): New variable.
---
gnu/packages/python-xyz.scm | 77 +++++++++++++++++++++++++++++++++++++
1 file changed, 77 insertions(+)
Toggle diff (90 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6c111bcb82..51753e279a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -319,6 +319,83 @@ (define-public python-janus
design}.")
(license license:asl2.0)))
+(define-public python-jupytext
+ (package
+ (name "python-jupytext")
+ (version "1.14.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mwouts/jupytext")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0gqpvphrp2ja9ggadx0rrk0sqbpz6kqqg62qqmw4k17469lphc8c"))))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "tests/utils.py"
+ ;; is required isort > 5.3.0 but the authors made a confusion
+ ;; between string comparations and version parsing comparasion
+ (("or isort_version\\(\\) <= \"5\\.3\\.0\"")
+ "")
+ (("\"python_kernel\"")
+ "\"python3\""))))
+ (replace 'check
+ (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+ ;; some tests fails when HOME=/homeless-shelter.
+ (setenv "HOME" "/tmp")
+ ;; OSError: [Errno 18] Invalid cross-device link
+ (setenv "TMPDIR" "/tmp")
+ (add-installed-pythonpath inputs outputs)
+ (when tests?
+ (let ((disabled-tests
+ (list "test_create_header_with_set_formats"
+ "test_pre_commit_hook"
+ "test_sync_with_pre_commit_hook")))
+ (invoke "pytest" "-vv" "-k"
+ (string-append "not "
+ (string-join disabled-tests
+ " and not "))))))))))
+ (native-inputs
+ (list git
+ python-autopep8
+ python-black
+ python-flake8
+ python-gitpython
+ python-isort
+ python-ipython-genutils
+ python-jupyter-server
+ python-pre-commit
+ python-pytest
+ python-pyaml
+ python-sphinx-gallery-0.7.0))
+ (propagated-inputs
+ (list python-markdown-it-py
+ python-mdit-py-plugins
+ python-nbformat))
+ (home-page "https://github.com/mwouts/jupytext")
+ (synopsis
+ "Jupyter notebooks as Markdown documents, Julia, Python or R scripts")
+ (description
+ "@code{Jupytext} is a plugin for @code{Jupyter} that can save @code{Jupyter
+notebooks} as either @code{Markdown} files or scripts in many languages. Common
+use cases for @code{Jupytext} are:
+@itemize
+@item
+version control on Jupyter Notebooks
+@item
+editing, merging or refactoring notebooks in your favorite text editor
+@item
+applying Q&A checks on notebooks.
+@end itemize")
+ (license license:expat)))
+
(define-public python-logzero
(package
(name "python-logzero")
--
2.37.3
Mădălin Ionel Patrașcu wrote 2 years ago
[PATCH 3/5] gnu: Add python-mdit-py-plugins. X-Debbugs-Cc: rekado@elephly.net
(address . 58490@debbugs.gnu.org)
20221013114006.9513-3-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/python-xyz.scm (python-mdit-py-plugins): New variable.
---
gnu/packages/python-xyz.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
Toggle diff (40 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 33b6c62346..6c111bcb82 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -625,6 +625,33 @@ (define-public python-lunr
that best match text queries.")
(license license:expat)))
+(define-public python-mdit-py-plugins
+ (package
+ (name "python-mdit-py-plugins")
+ (version "0.3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "mdit-py-plugins" version))
+ (sha256
+ (base32
+ "0l4pwsn2q30j160zjg79qa8v2brc4zl295rgrkpbfspcxr8lzhpc"))))
+ (build-system python-build-system)
+ (propagated-inputs (list python-markdown-it-py))
+ (native-inputs
+ (list python-coverage
+ python-pytest
+ python-pytest-cov
+ python-pytest-regressions))
+ (home-page "https://github.com/executablebooks/mdit-py-plugins")
+ (synopsis "Collection of plugins for markdown-it-py")
+ (description
+ "This package contains a collection of plugins for @code{markdown-it-py}
+like: @code{amsmath}, @code{attrs}, @code{container}, @code{definition list},
+@code{dollarmath}, @code{field list}, @code{footnote}, @code{textmath},
+@code{wordcount}.")
+ (license license:expat)))
+
(define-public python-mdurl
(package
(name "python-mdurl")
--
2.37.3
Ricardo Wurmus wrote 2 years ago
Add python-jupytext.
(address . 58490-done@debbugs.gnu.org)
87wn8lijx6.fsf@elephly.net
Hi,
I applied these patches with a number of changes.
- removed @code{} syntax around proper names
- removed unnecessary build phase
- fixed indentation
- used single semicolon for line comments
- did not apply patch for python-sphinx-gallery-0.7.0 because it’s not
needed
- use git-minimal
Thanks for the patches!
--
Ricardo
Closed
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