[PATCH] gnu: Add eccodes.

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3 participants
  • Antero Mejr
  • Maxime Devos
  • Vagrant Cascadian
Owner
unassigned
Submitted by
Antero Mejr
Severity
normal
A
A
Antero Mejr wrote on 25 Aug 2022 19:22
(address . guix-patches@gnu.org)(name . Antero Mejr)(address . antero@mailbox.org)
20220825172227.1110221-1-antero@mailbox.org
* gnu/packages/geo.scm (eccodes): New variable.
---
gnu/packages/geo.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)

Toggle diff (66 lines)
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 0c869fdebb..f1151fa95c 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -64,6 +64,7 @@ (define-module (gnu packages geo)
#:use-module (gnu packages boost)
#:use-module (gnu packages build-tools)
#:use-module (gnu packages check)
+ #:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpp)
#:use-module (gnu packages cups)
@@ -76,6 +77,7 @@ (define-module (gnu packages geo)
#:use-module (gnu packages flex)
#:use-module (gnu packages fonts)
#:use-module (gnu packages fontutils)
+ #:use-module (gnu packages gcc)
#:use-module (gnu packages gettext)
#:use-module (gnu packages gl)
#:use-module (gnu packages glib)
@@ -112,6 +114,7 @@ (define-module (gnu packages geo)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages shells)
#:use-module (gnu packages swig)
#:use-module (gnu packages sqlite)
#:use-module (gnu packages textutils)
@@ -2797,3 +2800,35 @@ (define-public libaec
point representations are not directly supported, they can also be efficiently
coded by grouping exponents and mantissa.")
(license license:bsd-2)))
+
+(define-public eccodes
+ (package
+ (name "eccodes")
+ (version "2.27.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ecmwf/eccodes")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1hd4lli6g4m77rdfqwq8kxqpgn9na7lhv0j47w0sw9ihy8qllq41"))))
+ (build-system cmake-build-system)
+ (arguments
+ (list #:configure-flags #~(list "-DECBUILD_DISABLE_NEW_DTAGS=OFF"
+ "-DENABLE_PNG=ON")))
+ (native-inputs (list ecbuild gfortran perl))
+ (inputs (list oksh libaec libpng netcdf openjpeg))
+ (home-page "https://confluence.ecmwf.int/display/ECC")
+ (synopsis "Encoder/decoder for GRIB and BUFR meteorological data files")
+ (description "ecCodes is a package developed by ECMWF which provides an
+application programming interface and a set of tools for decoding and encoding
+messages in the following formats:
+
+@itemize
+@item WMO FM-92 GRIB edition 1 and edition 2
+@item WMO FM-94 BUFR edition 3 and edition 4
+@item WMO GTS abbreviated header (only decoding)
+@end itemize")
+ (license license:asl2.0)))
--
2.37.2
A
A
Antero Mejr wrote on 25 Aug 2022 19:27
[PATCH] gnu: Add ecbuild.
(address . 57410@debbugs.gnu.org)(name . Antero Mejr)(address . antero@mailbox.org)
20220825172702.1111386-1-antero@mailbox.org
* gnu/packages/cmake.scm (ecbuild): New variable.
---
gnu/packages/cmake.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)

Toggle diff (56 lines)
diff --git a/gnu/packages/cmake.scm b/gnu/packages/cmake.scm
index cf930c57fc..aa89d4815c 100644
--- a/gnu/packages/cmake.scm
+++ b/gnu/packages/cmake.scm
@@ -32,6 +32,7 @@ (define-module (gnu packages cmake)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix deprecation)
@@ -49,6 +50,7 @@ (define-module (gnu packages cmake)
#:use-module (gnu packages kde-frameworks)
#:use-module (gnu packages libevent)
#:use-module (gnu packages ncurses)
+ #:use-module (gnu packages perl)
#:use-module (gnu packages serialization)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages texinfo)
@@ -406,3 +408,33 @@ (define-public emacs-cmake-mode
(description "@code{cmakeos-mode} provides an Emacs major mode for editing
Cmake files. It supports syntax highlighting, indenting and refilling of
comments.")))
+
+(define-public ecbuild
+ ;; when using set the configure flag "-DECBUILD_DISABLE_NEW_DTAGS=OFF"
+ ;; otherwise validate-runpath build step will fail when building Guix packages
+ (package
+ (name "ecbuild")
+ (version "3.7.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ecmwf/ecbuild")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1mcjdqwvkzli7xj2wlnr4hshfh3wi5rs585f9nvqjfpgwvn0ym14"))
+ (modules '((guix build utils)))
+ (snippet #~(substitute* "bin/ecbuild"
+ (("cmake=\\$\\{cmakebin:=cmake\\}")
+ (string-append "cmake=${cmakebin:="
+ #$cmake-minimal "/bin/cmake}"))))))
+ (build-system cmake-build-system)
+ (native-inputs (list perl))
+ (inputs (list cmake-minimal))
+ (home-page "https://ecbuild.readthedocs.io/en/latest/")
+ (synopsis "CMake wrapper and collection of macros")
+ (description "ecBuild is built on top of CMake and consists of a set of
+macros as well as a wrapper around CMake. Calling @code{ecbuild $SRC_DIR} is
+equivalent to @code{cmake -DCMAKE_MODULE_PATH=$ECBUILD_DIR/cmake $SRC_DIR}.")
+ (license license:asl2.0)))
--
2.37.2
A
A
Antero Mejr wrote on 25 Aug 2022 19:30
[PATCH] gnu: Add libaec.
(address . 57410@debbugs.gnu.org)(name . Antero Mejr)(address . antero@mailbox.org)
20220825173009.1111816-1-antero@mailbox.org
* gnu/packages/geo.scm (libaec): New variable.
---
gnu/packages/geo.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)

Toggle diff (34 lines)
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 66c97d3d6a..f23a8c1f4e 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -2773,3 +2773,27 @@ (define-public gplates
reconstructions of geological and paleogeographic features through geological
time. Interactively visualize vector, raster and volume data.")
(license license:gpl2+)))
+
+(define-public libaec
+ (package
+ (name "libaec")
+ (version "1.0.6")
+ (home-page "https://gitlab.dkrz.de/k202009/libaec")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url home-page)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "14myrmmiz9z6wgxqywf3a63cq514vrzsd6z4zvpwigvawlk30iip"))))
+ (build-system cmake-build-system)
+ (synopsis "Adaptive Entropy Coding library")
+ (description "Libaec provides fast lossless compression of 1 up to 32 bit
+wide signed or unsigned integers (samples). The library achieves best results
+for low entropy data as often encountered in space imaging instrument data or
+numerical model output from weather or climate simulations. While floating
+point representations are not directly supported, they can also be efficiently
+coded by grouping exponents and mantissa.")
+ (license license:bsd-2)))
--
2.37.2
M
M
Maxime Devos wrote on 28 Aug 2022 17:22
Re: [bug#57410] [PATCH] gnu: Add ecbuild.
44f0252d-21ef-ce14-03b3-b1f86071e047@telenet.be
On 25-08-2022 19:27, Antero Mejr via Guix-patches via wrote:
Toggle quote (13 lines)
> + (method git-fetch)
> + (uri (git-reference
> + (url"https://github.com/ecmwf/ecbuild")
> + (commit version)))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32
> + "1mcjdqwvkzli7xj2wlnr4hshfh3wi5rs585f9nvqjfpgwvn0ym14"))
> + (modules '((guix build utils)))
> + (snippet #~(substitute* "bin/ecbuild"
> + (("cmake=\\$\\{cmakebin:=cmake\\}")
> + (string-append "cmake=${cmakebin:="
> + #$cmake-minimal "/bin/cmake}"))))))
This 'source' is only usable inside Guix as it embeds store items, which
makes "guix build --source" less useful for sharing source code (see:
(guix)Snippets versus Phases).
Try doing this in a snippet instead.
Greetings,
Maxime.
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Attachment: OpenPGP_signature
A
A
Antero Mejr wrote on 29 Aug 2022 19:32
[PATCH] gnu: Add ecbuild.
(address . 57410@debbugs.gnu.org)
20220829173212.1494745-1-antero@mailbox.org
* gnu/packages/cmake.scm (ecbuild): New variable.
---
Patch Guix-specific paths in a build step rather than a snippet (from review).

gnu/packages/cmake.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)

Toggle diff (59 lines)
diff --git a/gnu/packages/cmake.scm b/gnu/packages/cmake.scm
index cf930c57fc..be4271f84c 100644
--- a/gnu/packages/cmake.scm
+++ b/gnu/packages/cmake.scm
@@ -32,6 +32,7 @@ (define-module (gnu packages cmake)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix deprecation)
@@ -49,6 +50,7 @@ (define-module (gnu packages cmake)
#:use-module (gnu packages kde-frameworks)
#:use-module (gnu packages libevent)
#:use-module (gnu packages ncurses)
+ #:use-module (gnu packages perl)
#:use-module (gnu packages serialization)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages texinfo)
@@ -406,3 +408,36 @@ (define-public emacs-cmake-mode
(description "@code{cmakeos-mode} provides an Emacs major mode for editing
Cmake files. It supports syntax highlighting, indenting and refilling of
comments.")))
+
+(define-public ecbuild
+ ;; when using set the configure flag "-DECBUILD_DISABLE_NEW_DTAGS=OFF"
+ ;; otherwise validate-runpath build step will fail when building Guix packages
+ (package
+ (name "ecbuild")
+ (version "3.7.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ecmwf/ecbuild")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1mcjdqwvkzli7xj2wlnr4hshfh3wi5rs585f9nvqjfpgwvn0ym14"))))
+ (arguments
+ (list #:phases #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-cmake-binary-path
+ (lambda _
+ (substitute* "bin/ecbuild"
+ (("cmake=\\$\\{cmakebin:=cmake\\}")
+ (string-append "cmake=${cmakebin:="
+ #$cmake-minimal "/bin/cmake}"))))))))
+ (build-system cmake-build-system)
+ (native-inputs (list perl))
+ (inputs (list cmake-minimal))
+ (home-page "https://ecbuild.readthedocs.io/en/latest/")
+ (synopsis "CMake wrapper and collection of macros")
+ (description "ecBuild is built on top of CMake and consists of a set of
+macros as well as a wrapper around CMake. Calling @code{ecbuild $SRC_DIR} is
+equivalent to @code{cmake -DCMAKE_MODULE_PATH=$ECBUILD_DIR/cmake $SRC_DIR}.")
+ (license license:asl2.0)))
--
2.37.2
V
V
Vagrant Cascadian wrote on 2 Sep 2023 06:13
87cyz1p5zy.fsf@wireframe
retitle 57410 gnu: Add ecbuild.
thanks

On 2022-08-29, Antero Mejr wrote:
Toggle quote (2 lines)
> * gnu/packages/cmake.scm (ecbuild): New variable.

The other two new packages proposed in this bug, eccodes and libaec,
have already been merged into guix:

1504edd84f1a0b4afda11cab99edc602d82085c1 gnu: Add eccodes.
d03b6fb0e3f0b81b35a9b35b89c213c144c59fe6 gnu: Add libaec.

Retitling bug to reflect outstanding issue.

live well,
vagrant
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