Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220822112627.32123-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-organism-dplyr): New variable.
---
gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
Toggle diff (54 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7d2ca413e9..ed9e4df73d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5017,6 +5017,45 @@ (define-public r-mzr
previously been used in XCMS.")
(license license:artistic2.0)))
+(define-public r-organism-dplyr
+ (package
+ (name "r-organism-dplyr")
+ (version "1.24.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Organism.dplyr" version))
+ (sha256
+ (base32
+ "0j29f85d66c45ww3417xx376vpz0mmvga5n7h2cl1sd4h70b55as"))))
+ (properties `((upstream-name . "Organism.dplyr")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationdbi
+ r-annotationfilter
+ r-biocfilecache
+ r-dbi
+ r-dbplyr
+ r-dplyr
+ r-genomeinfodb
+ r-genomicfeatures
+ r-genomicranges
+ r-iranges
+ r-rlang
+ r-rsqlite
+ r-s4vectors
+ r-tibble))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/Organism.dplyr")
+ (synopsis "Dplyr-based access to Bioconductor annotation resources")
+ (description
+ "This package provides an alternative interface to Bioconductor @code{
+annotation} resources, in particular the gene identifier mapping functionality
+of the @code{org} packages (e.g., @code{org.Hs.eg.db}) and the genome coordinate
+functionality of the @code{TxDb} packages (e.g.,
+@code{TxDb.Hsapiens.UCSC.hg38.knownGene}).")
+ (license license:artistic2.0)))
+
(define-public r-organismdbi
(package
(name "r-organismdbi")
base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
--
2.37.2