Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220822105941.30972-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
---
gnu/packages/bioconductor.scm | 55 +++++++++++++++++++++++++++++++++++
1 file changed, 55 insertions(+)
Toggle diff (70 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7d2ca413e9..cfcad75001 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5049,6 +5049,61 @@ (define-public r-organismdbi
the fact that each of these packages implements a select methods.")
(license license:artistic2.0)))
+(define-public r-pcaexplorer
+ (package
+ (name "r-pcaexplorer")
+ (version "2.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "pcaExplorer" version))
+ (sha256
+ (base32
+ "0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl"))))
+ (properties `((upstream-name . "pcaExplorer")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationdbi
+ r-base64enc
+ r-biomart
+ r-deseq2
+ r-dt
+ r-genefilter
+ r-genomicranges
+ r-ggplot2
+ r-ggrepel
+ r-go-db
+ r-gostats
+ r-heatmaply
+ r-iranges
+ r-knitr
+ r-limma
+ r-nmf
+ r-pheatmap
+ r-plotly
+ r-plyr
+ r-rmarkdown
+ r-s4vectors
+ r-scales
+ r-shiny
+ r-shinyace
+ r-shinybs
+ r-shinydashboard
+ r-summarizedexperiment
+ r-threejs
+ r-tidyr
+ r-topgo))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/federicomarini/pcaExplorer")
+ (synopsis
+ "Interactive Visualization of RNA-seq Data Using a Principal Components Approach")
+ (description
+ "This package provides functionality for interactive visualization of RNA-seq
+datasets based on Principal Components Analysis. The methods provided allow for
+quick information extraction and effective data exploration. A Shiny
+application encapsulates the whole analysis.")
+ (license license:expat)))
+
(define-public r-pcamethods
(package
(name "r-pcamethods")
base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
--
2.37.2