Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220728101800.10580-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-muscat): New variable.
---
gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
Toggle diff (65 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 31484799b2..c79787cea2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4629,6 +4629,56 @@ (define-public r-motifrg
throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0)))
+(define-public r-muscat
+ (package
+ (name "r-muscat")
+ (version "1.10.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "muscat" version))
+ (sha256
+ (base32
+ "1j3zkhqgza92vdykb1yia1jjwsdqra6q9c0jk6p5p2x0778xqgfd"))))
+ (properties `((upstream-name . "muscat")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocparallel
+ r-blme
+ r-complexheatmap
+ r-data-table
+ r-deseq2
+ r-dplyr
+ r-edger
+ r-ggplot2
+ r-glmmtmb
+ r-limma
+ r-lme4
+ r-lmertest
+ r-matrix
+ r-matrixstats
+ r-progress
+ r-purrr
+ r-s4vectors
+ r-scales
+ r-scater
+ r-sctransform
+ r-scuttle
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-variancepartition
+ r-viridis))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/HelenaLC/muscat")
+ (synopsis "Multi-sample multi-group scRNA-seq data analysis tools")
+ (description
+ "This package @code{muscat} provides various methods and visualization tools
+for @dfn{DS}(differential splicing) analysis in multi-sample, multi-group,
+multi-(cell-)subpopulation scRNA-seq data, including cell-level mixed models and
+methods based on aggregated \"pseudobulk\" data, as well as a flexible simulation
+platform that mimics both single and multi-sample scRNA-seq data.")
+ (license license:gpl3)))
+
(define-public r-mutationalpatterns
(package
(name "r-mutationalpatterns")
base-commit: dbcd7876566840f31b763e28bb74394f0914b397
--
2.37.1