Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220727081742.27956-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioinformatics.scm (r-millefy): New variable.
---
gnu/packages/bioinformatics.scm | 37 ++++++++++++++++++++++++++++++++-
1 file changed, 36 insertions(+), 1 deletion(-)
Toggle diff (59 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 325c159df1..cf736dfbaa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11,7 +11,7 @@
;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
-;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2018, 2019, 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
@@ -7523,6 +7523,41 @@ (define-public r-scde
;; See https://github.com/hms-dbmi/scde/issues/38
(license license:gpl2)))
+(define-public r-millefy
+ (package
+ (name "r-millefy")
+ (version "0.1.9-beta")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/yuifu/millefy")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0z2y0x99f761pxvg6n37cmnyrnj699jhjk43pvk05sa86iykgizl"))))
+ (properties `((upstream-name . "millefy")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-data-table
+ r-destiny
+ r-dplyr
+ r-genomicranges
+ r-iranges
+ r-magrittr
+ r-rsamtools
+ r-rtracklayer
+ r-tidyr))
+ (home-page "https://github.com/yuifu/millefy")
+ (synopsis "Make millefy plot with single-cell RNA-seq data")
+ (description "@code{Millefy} is a tool for visualizing read coverage of
+@dfn{scRNA-seq}(single-cell RNA sequencing) datasets in genomic contexts. By
+dynamically and automatically reorder single cells based on locus-specific
+pseudo time, @code{Millefy} highlights cell-to-cell heterogeneity in read coverage
+of scRNA-seq data.")
+ (license license:expat)))
+
(define-public r-misha
(package
(name "r-misha")
base-commit: dbcd7876566840f31b763e28bb74394f0914b397
--
2.37.1