Mădălin Ionel Patrașcu wrote 3 years ago
(address . guix-patches@gnu.org)
20220627224213.23031-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-banocc): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..61ce070559 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,34 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-banocc
+ (package
+ (name "r-banocc")
+ (version "1.20.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "banocc" version))
+ (sha256
+ (base32
+ "10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx"))))
+ (properties `((upstream-name . "banocc")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-coda
+ r-mvtnorm
+ r-rstan
+ r-stringr))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/banocc")
+ (synopsis "Bayesian analysis of compositional covariance")
+ (description
+ "@code{BAnOCC} is a package designed for compositional data, where each
+sample sums to one. It infers the approximate covariance of the unconstrained
+data using a Bayesian model coded with @code{rstan}. It provides as output the
+@code{stanfit} object as well as posterior median and credible interval estimates
+for each correlation element.")
+ (license license:expat)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
--
2.36.1