[PATCH] gnu: Add r-badregionfinder.

OpenSubmitted by Mădălin Ionel Patrașcu.
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  • Mădălin Ionel Patrașcu
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Mădălin Ionel Patrașcu wrote on 27 Jun 23:39 +0200
(address . guix-patches@gnu.org)
20220627213936.19198-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/bioconductor.scm (r-badregionfinder): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)

Toggle diff (43 lines)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..aa4ba4706d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,34 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-badregionfinder
+  (package
+    (name "r-badregionfinder")
+    (version "1.24.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BadRegionFinder" version))
+              (sha256
+               (base32
+                "1a1pqmh5ak9s3k1lxw6flanchk24zyznwm34ixi2b78wdc3hqgm9"))))
+    (properties `((upstream-name . "BadRegionFinder")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biomart
+           r-genomicranges
+           r-rsamtools
+           r-s4vectors
+           r-variantannotation))
+    (home-page "https://bioconductor.org/packages/BadRegionFinder")
+    (synopsis "Identifying regions with bad coverage in sequence alignment data")
+    (description
+     "@code{BadRegionFinder} is a package for identifying regions with a bad,
+acceptable and good coverage in sequence alignment data available as bam files.
+The whole genome may be considered as well as a set of target regions.  Various
+visual and textual types of output are available.")
+    (license license:lgpl3)))
+
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
-- 
2.36.1
?